Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_K22
(294 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0178 - 14941342-14941391,14941909-14942002,14942498-149427... 85 9e-18
07_01_0465 + 3513296-3513631,3514386-3514442,3515196-3515306,351... 58 2e-09
03_02_0089 + 5561622-5561855,5562748-5563247,5563411-5563501 29 0.49
04_03_0779 - 19507771-19507992,19508678-19508990,19509235-195092... 29 0.65
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 28 1.5
05_03_0587 + 15859009-15859070,15860022-15860103,15860603-158607... 27 2.6
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 26 4.6
04_03_0517 + 16712487-16712570,16713715-16714059,16714149-167143... 26 4.6
12_01_0878 - 8420348-8420580,8420728-8420890 26 6.1
06_03_0606 - 22689935-22689998,22690716-22691159,22691669-226920... 26 6.1
08_02_1097 + 24284494-24284496,24284946-24285407,24285476-242864... 25 8.0
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 25 8.0
04_04_0819 - 28312667-28313219,28315157-28316430 25 8.0
03_05_0739 + 27271404-27271988,27272265-27272411 25 8.0
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451... 25 8.0
>12_02_0178 -
14941342-14941391,14941909-14942002,14942498-14942716,
14943409-14943492,14943783-14944067,14944349-14944501,
14944618-14944740,14945429-14945495,14946122-14946309,
14947134-14947250,14947720-14947812,14948377-14948459,
14948565-14948610
Length = 533
Score = 85.0 bits (201), Expect = 9e-18
Identities = 35/52 (67%), Positives = 42/52 (80%)
Frame = +1
Query: 13 CKAFVDMLVAGGIRADGDYRDNYSPGWKFNHWELKGVPVRIEIGPKDMAKGE 168
CK V+ L GIRAD D R+NYSPGWK++HWE+KGVP+RIEIGPKDMA +
Sbjct: 334 CKKTVETLEKAGIRADLDTRENYSPGWKYSHWEMKGVPLRIEIGPKDMANNQ 385
>07_01_0465 +
3513296-3513631,3514386-3514442,3515196-3515306,
3515466-3515552,3515627-3515740,3515850-3516056,
3516291-3516428,3516691-3516852,3516939-3517138,
3517429-3517554,3517644-3517785
Length = 559
Score = 57.6 bits (133), Expect = 2e-09
Identities = 25/51 (49%), Positives = 34/51 (66%)
Frame = +1
Query: 34 LVAGGIRADGDYRDNYSPGWKFNHWELKGVPVRIEIGPKDMAKGEVVAVQR 186
L GIR D + +PGWKFN +E+KGVP+R+EIGP+D+ VV +R
Sbjct: 377 LKEAGIRVKVDDSELRTPGWKFNFYEMKGVPIRLEIGPRDVTNKSVVISRR 427
>03_02_0089 + 5561622-5561855,5562748-5563247,5563411-5563501
Length = 274
Score = 29.5 bits (63), Expect = 0.49
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -3
Query: 226 RPRLVLASFSRPQTFALRRL--RPSPYP*DRSRYGPEHPSTPND*ISSPVNS 77
RP + L FS F + R +PY +RS HPS+ +D SP+++
Sbjct: 137 RPSITLDEFSATDVFRIIDFGNRDAPYEANRSSSSLAHPSSESDEERSPIDT 188
>04_03_0779 -
19507771-19507992,19508678-19508990,19509235-19509296,
19509845-19509904,19510260-19510367,19510452-19510561,
19510656-19510701,19510812-19510884,19510970-19511100,
19511270-19511356,19511871-19511968,19512849-19512971,
19513091-19513286
Length = 542
Score = 29.1 bits (62), Expect = 0.65
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -3
Query: 211 LASFSRPQTFALRRLRPSPYP*DRSRYGPEHPSTPND*ISSPVNSCPCN 65
L + SRP A L P R R P P+D S+P +S P N
Sbjct: 16 LGALSRPSRVAPSPLAALAAPRRRRRRSPSPSPAPSDSDSNPASSAPAN 64
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 226 RPRLVLASFSRPQTFALRRLRPSPYP*DRSRYGPEHPSTP 107
RP + ++ PQT LR L P+ +R + PE STP
Sbjct: 169 RPDSSVPIYTPPQTQPLRNLPPALRNTERQQEAPESSSTP 208
>05_03_0587 +
15859009-15859070,15860022-15860103,15860603-15860785,
15861522-15861719,15861858-15862004,15862485-15862856
Length = 347
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 79 YSPGWKFNHWELKGVPVRIEIGPKDMAKGEVVAVQRFAGE 198
Y P K +HW+L G ++IE GP + G V+ F+G+
Sbjct: 129 YEPMVK-HHWDLSGSWIQIENGPDVIGAGSWVS-PSFSGD 166
>12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 67 YRDNYSPGWKFNHWELKGVPVRIEIGP 147
Y D SPG +F H + G+P GP
Sbjct: 968 YPDFISPGAEFGHRGIDGIPTLRNAGP 994
>04_03_0517 +
16712487-16712570,16713715-16714059,16714149-16714301,
16714889-16714972,16715426-16715479,16715552-16715647,
16716163-16716258,16716941-16717086,16717650-16717799,
16717889-16718018,16718128-16718787,16718881-16718979,
16719058-16719210,16719323-16720054,16720338-16720640
Length = 1094
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 139 IGPKDMAKGEVVAVQRFAGEKMTLKRDAAVND 234
+ P K E ++ RFA ++K +A VN+
Sbjct: 398 VSPSQSCKSETLSTLRFAQRAKSIKNNAVVNE 429
>12_01_0878 - 8420348-8420580,8420728-8420890
Length = 131
Score = 25.8 bits (54), Expect = 6.1
Identities = 8/35 (22%), Positives = 22/35 (62%)
Frame = +1
Query: 76 NYSPGWKFNHWELKGVPVRIEIGPKDMAKGEVVAV 180
+++ G ++ W+L+G V +E+ +D+ + + +V
Sbjct: 56 SWTTGLEWRQWQLRGAAVMLEVEEEDLERLTMTSV 90
>06_03_0606 -
22689935-22689998,22690716-22691159,22691669-22692057,
22692130-22692223,22692507-22692599,22692705-22692913,
22692999-22693833,22693948-22694038,22698069-22698892,
22699384-22700489,22701353-22701415
Length = 1403
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 25 VDMLVAGGIRADGDYRDNYSPGWKFNHWELKGVPVRIEIG 144
V M++A +R +PGW+ +L G+P+ IE G
Sbjct: 762 VAMILALPLRGHAVTGRTETPGWRAQVEQLFGIPLNIEQG 801
>08_02_1097 +
24284494-24284496,24284946-24285407,24285476-24286450,
24286566-24286655,24286760-24287021,24287447-24287472
Length = 605
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 207 RHFLARKPLHCDDFALRHILR 145
+H LAR+PL+ D F H LR
Sbjct: 582 QHRLAREPLYVDPFLTGHELR 602
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 25.4 bits (53), Expect = 8.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 76 NYSPGWKFNHWEL 114
++ P WKF+HW L
Sbjct: 475 SWRPRWKFHHWSL 487
>04_04_0819 - 28312667-28313219,28315157-28316430
Length = 608
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = +1
Query: 88 GWKFNHWELKGVPVRIEIGPKDMAKGEVVAVQRFAGEKMTLKRDAAVND 234
G + W PV GP ++ G VAV F G M L +A D
Sbjct: 204 GQDVSTWLANKPPVFASAGPTEILYGLGVAVYAFEGIGMVLPLEAEAAD 252
>03_05_0739 + 27271404-27271988,27272265-27272411
Length = 243
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 180 HCDDFALRHILRTDLDTDRN 121
H DD L HILR ++DTD++
Sbjct: 178 HADDAVLDHILR-EVDTDKD 196
>02_04_0121 -
19943988-19944251,19944534-19944734,19944802-19945124,
19945283-19945316,19945479-19945856,19946425-19946678,
19946791-19946938,19947052-19947198,19947287-19947664
Length = 708
Score = 25.4 bits (53), Expect = 8.0
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +1
Query: 13 CKAFVDMLVAGGIRADGDYRDNYSPGWKFNHWELKGVPVRIEIGPKDMAKGEVVAVQRFA 192
C L + GIRA+ + + + E K VP+ +GPK++ + R +
Sbjct: 625 CNEVASELKSKGIRAEVCHGERLPK--LIRNAETKKVPLMAVVGPKEVQARTLTIRSRHS 682
Query: 193 GEKMTLKRD 219
GE T+ D
Sbjct: 683 GEIGTMPVD 691
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,090,598
Number of Sequences: 37544
Number of extensions: 128479
Number of successful extensions: 321
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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