Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K22
         (294 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00037-3|AAA50660.1|  581|Caenorhabditis elegans Prolyl trna syn...   101   9e-23
U00037-4|AAU20840.1|  454|Caenorhabditis elegans Prolyl trna syn...    78   1e-15
Z92790-2|CAB07224.2|  377|Caenorhabditis elegans Hypothetical pr...    26   5.4  
AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical ...    26   5.4  
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U58735-5|AAC48145.1|  210|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AL117203-4|CAB55106.2|  813|Caenorhabditis elegans Hypothetical ...    25   9.4  
AF059715-1|AAF05624.1|  813|Caenorhabditis elegans cell survival...    25   9.4  

>U00037-3|AAA50660.1|  581|Caenorhabditis elegans Prolyl trna
           synthetase protein1, isoform a protein.
          Length = 581

 Score =  101 bits (242), Expect = 9e-23
 Identities = 43/87 (49%), Positives = 58/87 (66%)
 Frame = +1

Query: 34  LVAGGIRADGDYRDNYSPGWKFNHWELKGVPVRIEIGPKDMAKGEVVAVQRFAGEKMTLK 213
           LVA G++A+ D R+NY+ GWKFNHWELKGVP+R E+GP D+AK +V AV R  GEK  L 
Sbjct: 405 LVADGVKAEHDLRENYNAGWKFNHWELKGVPIRFEVGPNDLAKNQVTAVIRHNGEKKQLS 464

Query: 214 RDAAVNDITALLERTHDQMFQKSTKER 294
            +     + +LL+  H  M+ K   +R
Sbjct: 465 LEGLSKTVKSLLDEIHTAMYNKVLAQR 491


>U00037-4|AAU20840.1|  454|Caenorhabditis elegans Prolyl trna
           synthetase protein1, isoform b protein.
          Length = 454

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 29/45 (64%), Positives = 38/45 (84%)
 Frame = +1

Query: 34  LVAGGIRADGDYRDNYSPGWKFNHWELKGVPVRIEIGPKDMAKGE 168
           LVA G++A+ D R+NY+ GWKFNHWELKGVP+R E+GP D+AK +
Sbjct: 405 LVADGVKAEHDLRENYNAGWKFNHWELKGVPIRFEVGPNDLAKNQ 449


>Z92790-2|CAB07224.2|  377|Caenorhabditis elegans Hypothetical
           protein H03G16.2 protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 94  KFNHWELKGVPVRIEIGPKDMAK 162
           +F HW   GV VR+ I P  M +
Sbjct: 120 RFRHWTSPGVKVRVCIRPPSMRR 142


>AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical
           protein Y39G8C.1 protein.
          Length = 1195

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 217 DAAVNDITALLERTHDQMFQKSTKER 294
           + A+ND T+ +ER  D+ F +S + R
Sbjct: 351 ELALNDKTSFMERLEDEQFMESKRIR 376


>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical
           protein R03G5.3 protein.
          Length = 1311

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 266 WSCVLSSNAVMSLTAASRFSVIFSPANLCTATTSPFAISL 147
           W C      ++  TA   FS+   P+  CT  T  F ISL
Sbjct: 678 WFCRTQKLTMILSTAVFLFSLELFPSGHCTDCTLIFPISL 717


>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical
           protein R11A8.6 protein.
          Length = 1141

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +1

Query: 91  WKFNHWELKGVPVRI---EIGPKDMAKGEVVAVQRFAGEKMTLKRDAAVNDIT 240
           W  +     G P+ +   E G + +  G +  ++  +G+K+T     +V+D+T
Sbjct: 456 WAVSRNRFWGTPINLWVSEDGEEVVCVGSIAELEELSGQKITDLHRESVDDVT 508


>U58735-5|AAC48145.1|  210|Caenorhabditis elegans Hypothetical
           protein F20B4.4 protein.
          Length = 210

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +3

Query: 192 GRENDAKTRRGRQRHYRITREDTRPDVSEVNKRT 293
           GR+++ ++RRGR  H R      +  ++ +  +T
Sbjct: 43  GRQSNRRSRRGRPHHLRSPAATIKGTITRIVNKT 76


>AL117203-4|CAB55106.2|  813|Caenorhabditis elegans Hypothetical
           protein Y48C3A.7 protein.
          Length = 813

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 198 ENDAKTRRGRQRHYRITREDTRPDVSEVNKR 290
           END   +    RH+R      RP V+E +++
Sbjct: 764 ENDESVKGVGMRHFREAASRIRPSVTEADRK 794


>AF059715-1|AAF05624.1|  813|Caenorhabditis elegans cell survival
           CED-4-interactingprotein MAC-1 protein.
          Length = 813

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 198 ENDAKTRRGRQRHYRITREDTRPDVSEVNKR 290
           END   +    RH+R      RP V+E +++
Sbjct: 764 ENDESVKGVGMRHFREAASRIRPSVTEADRK 794


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,875,137
Number of Sequences: 27780
Number of extensions: 104261
Number of successful extensions: 286
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)