Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K22
         (294 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   1.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   4.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   4.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   5.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   5.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   7.3  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 100 NHWELKGVPVRIEIGPKDMAKG 165
           N+  +KG  VRI IGPK+  +G
Sbjct: 493 NNTSMKGT-VRIFIGPKEDERG 513


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 118 GVPVRIEIGPKDMAKGEVVAVQR 186
           G  VR+ +GPK   +G  +++ +
Sbjct: 532 GAVVRVFLGPKHDHQGRPISISK 554


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 67  YRDNYSPGWKFNHWELKGVPVRI 135
           Y  NYS  W   H  LKG+   I
Sbjct: 259 YTYNYSMYWGQGHAILKGLKTSI 281


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 145 DRSRYGPEHPSTPND 101
           +++ Y P HPST  D
Sbjct: 385 EKTCYYPYHPSTQED 399


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 145 DRSRYGPEHPSTPND 101
           +++ Y P HPST  D
Sbjct: 385 EKTCYYPYHPSTQED 399


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 254 GHTTRCF 274
           GHT RCF
Sbjct: 294 GHTVRCF 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,718
Number of Sequences: 438
Number of extensions: 1556
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)