Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K20
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    34   0.004
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    29   0.12 
SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...    27   0.82 
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   3.3  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    25   3.3  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    24   4.4  

>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 34.3 bits (75), Expect = 0.004
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 97  SVPATAPMETQNQDAARSPGEVPNDPGKMFVGGLSWQTSPE 219
           ++  +  ME+ N+D A        + GKMF+GGL+W+T+ +
Sbjct: 138 ALTGSGAMES-NEDNAEETSPFNREDGKMFIGGLNWETTDD 177


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 29.5 bits (63), Expect = 0.12
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +1

Query: 64  RSLVRPPTGSQSVPATAPMETQNQDAARSPGEVPNDPGKMFVGGLSWQTSPELCNKSHKK 243
           R LVR P  S   P T P   + Q   RS     +D G + + G  W T  E+  ++  +
Sbjct: 403 RPLVRDP--STVPPGTDPTTGETQGLVRSHFIFKSDTGLLTISGGKWTTYREMAEETVNE 460

Query: 244 CFLTH 258
               H
Sbjct: 461 LIKDH 465


>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score = 26.6 bits (56), Expect = 0.82
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 125 VSMGAVAGTLCEPVGGRTRL 66
           V  G+ A  LC+P GG+ RL
Sbjct: 54  VICGSCASVLCQPTGGKARL 73


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 231 ITQEVFFDSLQPGLNIEET*IAERY 305
           +TQ V  + ++  LNIEET + E+Y
Sbjct: 289 VTQFVRDEDMEVDLNIEETVLKEKY 313


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 221 YAINHTRSVF*LITTWFKHRRNV 289
           + ++H  S+  LIT W  HRR V
Sbjct: 222 FVLHHMCSIGFLITIWLHHRRCV 244


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 236 CDLLHNSGLVCQLSPPTNIFPGSLGTSPGL 147
           C++ +N  L C+ S    +FP S   S GL
Sbjct: 341 CEVSYNLLLTCRSSNRFRLFPASTPNSNGL 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,233,181
Number of Sequences: 5004
Number of extensions: 22925
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)