Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_K20
(306 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 38 0.001
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 38 0.001
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 31 0.21
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 31 0.21
AL117202-4|CAB55095.3| 222|Caenorhabditis elegans Hypothetical ... 31 0.21
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 31 0.21
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 31 0.21
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 30 0.37
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 30 0.37
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 30 0.37
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 30 0.37
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 30 0.37
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 30 0.37
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 30 0.37
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical... 28 1.5
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ... 28 1.5
AL110487-4|CAB54427.1| 505|Caenorhabditis elegans Hypothetical ... 26 4.5
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 26 6.0
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 26 6.0
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 26 6.0
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 37.9 bits (84), Expect = 0.001
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +1
Query: 169 DPGKMFVGGLSWQTSPE 219
DPGKMF+GGLSWQT+ E
Sbjct: 43 DPGKMFIGGLSWQTTAE 59
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 37.9 bits (84), Expect = 0.001
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +1
Query: 169 DPGKMFVGGLSWQTSPE 219
DPGKMF+GGLSWQT+ E
Sbjct: 43 DPGKMFIGGLSWQTTAE 59
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 30.7 bits (66), Expect = 0.21
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 19 SRVTPGAVPAASSLFRSLVRPPTGSQSVPATAPMETQNQDAARSP 153
S++TP P A++ S++R +VPA AP + Q AA P
Sbjct: 321 SKLTPKIRPIATANRSSILRMNVVKPTVPAPAPADAQQNKAASRP 365
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 30.7 bits (66), Expect = 0.21
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 19 SRVTPGAVPAASSLFRSLVRPPTGSQSVPATAPMETQNQDAARSP 153
S++TP P A++ S++R +VPA AP + Q AA P
Sbjct: 321 SKLTPKIRPIATANRSSILRMNVVKPTVPAPAPADAQQNKAASRP 365
>AL117202-4|CAB55095.3| 222|Caenorhabditis elegans Hypothetical
protein Y47D3A.5 protein.
Length = 222
Score = 30.7 bits (66), Expect = 0.21
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +1
Query: 61 FRSLVRPPTGSQSVPATAPMETQNQDAARSPGE----VPNDPGKMFVGGLSWQTS 213
FRS+ P T S++ P T P +T R+P P PGK+ + + Q S
Sbjct: 70 FRSVRLPRTPSRNSPLTPPTKTPPHTPTRTPTTESPVAPRTPGKVVISSVEKQES 124
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 30.7 bits (66), Expect = 0.21
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 19 SRVTPGAVPAASSLFRSLVRPPTGSQSVPATAPMETQNQDAARSP 153
S++TP P A++ S++R +VPA AP + Q AA P
Sbjct: 321 SKLTPKIRPIATANRSSILRMNVVKPTVPAPAPADAQQNKAASRP 365
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 30.7 bits (66), Expect = 0.21
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 19 SRVTPGAVPAASSLFRSLVRPPTGSQSVPATAPMETQNQDAARSP 153
S++TP P A++ S++R +VPA AP + Q AA P
Sbjct: 321 SKLTPKIRPIATANRSSILRMNVVKPTVPAPAPADAQQNKAASRP 365
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 29.9 bits (64), Expect = 0.37
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +1
Query: 67 SLVRPPTGSQSVPA--TAPMETQNQDAARSPGEVPNDPGKMFVGGLSWQTSPELCNKSHK 240
S+V P S + A T P + D + SP E D KMFVG + Q + C + +
Sbjct: 17 SVVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFE 76
Query: 241 K 243
K
Sbjct: 77 K 77
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 29.9 bits (64), Expect = 0.37
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +1
Query: 67 SLVRPPTGSQSVPA--TAPMETQNQDAARSPGEVPNDPGKMFVGGLSWQTSPELCNKSHK 240
S+V P S + A T P + D + SP E D KMFVG + Q + C + +
Sbjct: 17 SVVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFE 76
Query: 241 K 243
K
Sbjct: 77 K 77
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 29.9 bits (64), Expect = 0.37
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +1
Query: 67 SLVRPPTGSQSVPA--TAPMETQNQDAARSPGEVPNDPGKMFVGGLSWQTSPELCNKSHK 240
S+V P S + A T P + D + SP E D KMFVG + Q + C + +
Sbjct: 17 SVVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFE 76
Query: 241 K 243
K
Sbjct: 77 K 77
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 29.9 bits (64), Expect = 0.37
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +1
Query: 67 SLVRPPTGSQSVPA--TAPMETQNQDAARSPGEVPNDPGKMFVGGLSWQTSPELCNKSHK 240
S+V P S + A T P + D + SP E D KMFVG + Q + C + +
Sbjct: 17 SVVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFE 76
Query: 241 K 243
K
Sbjct: 77 K 77
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 29.9 bits (64), Expect = 0.37
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +1
Query: 67 SLVRPPTGSQSVPA--TAPMETQNQDAARSPGEVPNDPGKMFVGGLSWQTSPELCNKSHK 240
S+V P S + A T P + D + SP E D KMFVG + Q + C + +
Sbjct: 17 SVVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFE 76
Query: 241 K 243
K
Sbjct: 77 K 77
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 29.9 bits (64), Expect = 0.37
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +1
Query: 67 SLVRPPTGSQSVPA--TAPMETQNQDAARSPGEVPNDPGKMFVGGLSWQTSPELCNKSHK 240
S+V P S + A T P + D + SP E D KMFVG + Q + C + +
Sbjct: 17 SVVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFE 76
Query: 241 K 243
K
Sbjct: 77 K 77
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 29.9 bits (64), Expect = 0.37
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +1
Query: 67 SLVRPPTGSQSVPA--TAPMETQNQDAARSPGEVPNDPGKMFVGGLSWQTSPELCNKSHK 240
S+V P S + A T P + D + SP E D KMFVG + Q + C + +
Sbjct: 17 SVVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFE 76
Query: 241 K 243
K
Sbjct: 77 K 77
>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
protein Y18D10A.13 protein.
Length = 2417
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/67 (26%), Positives = 27/67 (40%)
Frame = +1
Query: 19 SRVTPGAVPAASSLFRSLVRPPTGSQSVPATAPMETQNQDAARSPGEVPNDPGKMFVGGL 198
S VT + L+ +P S S +T E +N+ S GE DP G+
Sbjct: 952 SAVTLVTIDGKQRLYHVTGQPAIDSSSTESTWITEVRNRLLRTSTGEDSGDPSAAGAAGI 1011
Query: 199 SWQTSPE 219
+SP+
Sbjct: 1012 LRSSSPD 1018
>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
protein protein.
Length = 2417
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/67 (26%), Positives = 27/67 (40%)
Frame = +1
Query: 19 SRVTPGAVPAASSLFRSLVRPPTGSQSVPATAPMETQNQDAARSPGEVPNDPGKMFVGGL 198
S VT + L+ +P S S +T E +N+ S GE DP G+
Sbjct: 952 SAVTLVTIDGKQRLYHVTGQPAIDSSSTESTWITEVRNRLLRTSTGEDSGDPSAAGAAGI 1011
Query: 199 SWQTSPE 219
+SP+
Sbjct: 1012 LRSSSPD 1018
>AL110487-4|CAB54427.1| 505|Caenorhabditis elegans Hypothetical
protein Y39E4B.5 protein.
Length = 505
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Frame = +1
Query: 181 MFVGGLSWQTSPELCNKSHK-----KCFLTHYNLV 270
M +G LSW +PEL ++ H+ CF H L+
Sbjct: 380 MVLGPLSWFVAPELVSQRHRCTIFSACFAIHNLLI 414
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = +1
Query: 37 AVPAASSLFRSLVRPPTGSQSVPATAPMETQNQDAARSPGEVPNDPGKMFVGGLSWQTSP 216
A P +SS S P SQS T +Q +++SP N G +P
Sbjct: 375 ATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITP 434
Query: 217 E 219
E
Sbjct: 435 E 435
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = +1
Query: 37 AVPAASSLFRSLVRPPTGSQSVPATAPMETQNQDAARSPGEVPNDPGKMFVGGLSWQTSP 216
A P +SS S P SQS T +Q +++SP N G +P
Sbjct: 582 ATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITP 641
Query: 217 E 219
E
Sbjct: 642 E 642
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = +1
Query: 37 AVPAASSLFRSLVRPPTGSQSVPATAPMETQNQDAARSPGEVPNDPGKMFVGGLSWQTSP 216
A P +SS S P SQS T +Q +++SP N G +P
Sbjct: 582 ATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITP 641
Query: 217 E 219
E
Sbjct: 642 E 642
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,086,738
Number of Sequences: 27780
Number of extensions: 141758
Number of successful extensions: 600
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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