Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K20
         (306 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    25   0.28 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   0.64 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   2.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   6.0  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    20   7.9  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    20   7.9  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    20   7.9  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    20   7.9  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    20   7.9  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    20   7.9  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    20   7.9  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          20   7.9  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          20   7.9  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          20   7.9  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          20   7.9  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          20   7.9  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          20   7.9  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          20   7.9  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    20   7.9  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    20   7.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   7.9  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 24.6 bits (51), Expect = 0.28
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 125 VSMGAVAGTLCEPVG 81
           V++G  AG +C+PVG
Sbjct: 282 VAIGTAAGMMCQPVG 296


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 0.64
 Identities = 16/54 (29%), Positives = 21/54 (38%)
 Frame = +1

Query: 31  PGAVPAASSLFRSLVRPPTGSQSVPATAPMETQNQDAARSPGEVPNDPGKMFVG 192
           PGA PA +    +     T + +   T P  TQN  A   P +V     K   G
Sbjct: 651 PGA-PATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQVDEVDDKELSG 703



 Score = 20.2 bits (40), Expect = 6.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 73  VRPPTGSQSVPATAPMET 126
           + PP  S S+PAT    T
Sbjct: 94  LHPPASSTSLPATITTTT 111



 Score = 20.2 bits (40), Expect = 6.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 39   RPRRVIAIS*SSAPADR 89
            RP RV  +  S +P+DR
Sbjct: 1368 RPERVPTVDLSPSPSDR 1384


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 163 APLRGYGPHPGFGSPWGLSP 104
           AP RG  P+P  G P G  P
Sbjct: 33  APQRGSPPNPSQGPPPGGPP 52


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 133 QDAARSPGEVPNDPGKMFVGGLSWQTSP 216
           +DA  S GE     G+M      WQ +P
Sbjct: 399 RDAFTSKGEYRMSTGEMKEAITQWQGNP 426


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 166 WAPLRGYGPHPGFGSPWGLSPARF 95
           W P+RG  P      P    P RF
Sbjct: 109 WVPMRGQVPGSRHIGPLTPFPPRF 132


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 166 WAPLRGYGPHPGFGSPWGLSPARF 95
           W P+RG  P      P    P RF
Sbjct: 109 WVPMRGQVPGSRHIGPLTPFPPRF 132


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 166 WAPLRGYGPHPGFGSPWGLSPARF 95
           W P+RG  P      P    P RF
Sbjct: 109 WVPMRGQVPGSRHIGPLTPFPPRF 132


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 166 WAPLRGYGPHPGFGSPWGLSPARF 95
           W P+RG  P      P    P RF
Sbjct: 109 WVPMRGQVPGSRHIGPLTPFPPRF 132


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 166 WAPLRGYGPHPGFGSPWGLSPARF 95
           W P+RG  P      P    P RF
Sbjct: 109 WVPMRGQVPGSRHIGPLTPFPPRF 132


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 166 WAPLRGYGPHPGFGSPWGLSPARF 95
           W P+RG  P      P    P RF
Sbjct: 109 WVPMRGQVPGSRHIGPLTPFPPRF 132


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 166 WAPLRGYGPHPGFGSPWGLSPARF 95
           W P+RG  P      P    P RF
Sbjct: 109 WVPMRGQVPGSRHIGPLTPFPPRF 132


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 166 WAPLRGYGPHPGFGSPWGLSPARF 95
           W P+RG  P      P    P RF
Sbjct: 358 WVPMRGQVPGSRHIGPLTPFPPRF 381


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 166 WAPLRGYGPHPGFGSPWGLSPARF 95
           W P+RG  P      P    P RF
Sbjct: 358 WVPMRGQVPGSRHIGPLTPFPPRF 381


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 166 WAPLRGYGPHPGFGSPWGLSPARF 95
           W P+RG  P      P    P RF
Sbjct: 358 WVPMRGQVPGSRHIGPLTPFPPRF 381


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 166 WAPLRGYGPHPGFGSPWGLSPARF 95
           W P+RG  P      P    P RF
Sbjct: 358 WVPMRGQVPGSRHIGPLTPFPPRF 381


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 166 WAPLRGYGPHPGFGSPWGLSPARF 95
           W P+RG  P      P    P RF
Sbjct: 358 WVPMRGQVPGSRHIGPLTPFPPRF 381


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 166 WAPLRGYGPHPGFGSPWGLSPARF 95
           W P+RG  P      P    P RF
Sbjct: 358 WVPMRGQVPGSRHIGPLTPFPPRF 381


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 166 WAPLRGYGPHPGFGSPWGLSPARF 95
           W P+RG  P      P    P RF
Sbjct: 357 WVPMRGQVPGSRHIGPLTPFPPRF 380


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 166 WAPLRGYGPHPGFGSPWGLSPARF 95
           W P+RG  P      P    P RF
Sbjct: 342 WVPMRGQVPGSRHIGPLTPFPPRF 365


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 166 WAPLRGYGPHPGFGSPWGLSPARF 95
           W P+RG  P      P    P RF
Sbjct: 358 WVPMRGQVPGSRHIGPLTPFPPRF 381


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +2

Query: 179 RC--SSEDSAGRLVQNYAINHTRS 244
           RC  S   ++GR    Y+++H RS
Sbjct: 422 RCKPSQRFASGRYYSAYSLHHVRS 445


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,619
Number of Sequences: 438
Number of extensions: 1582
Number of successful extensions: 28
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)