Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_K19
(386 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF... 42 4e-05
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ... 41 8e-05
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 27 1.4
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 3.1
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 3.1
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 25 4.1
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 25 5.5
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 5.5
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 24 7.2
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 24 9.6
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 24 9.6
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 24 9.6
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 24 9.6
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.6
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 24 9.6
>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
4F complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 41.5 bits (93), Expect = 4e-05
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +1
Query: 124 FLIKHPLQNTWSLWFYDND-RNKTWEENLIEVDHDLSFF*RTLLGDCTDA*SNVPSELRQ 300
F+ HPLQ+ W+LWF + W + L E+ +SF S S L
Sbjct: 60 FVKTHPLQHEWTLWFLKPPTQGLEWSDLLKEI---ISFKTVEEFWGIFKTISKA-SMLPA 115
Query: 301 GHDYAVCKHGIRPMWEDDAR*MGGRW 378
DY+ GIRP WED GG+W
Sbjct: 116 KSDYSYFLKGIRPEWEDPQNMNGGKW 141
>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 218
Score = 40.7 bits (91), Expect = 8e-05
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +1
Query: 124 FLIKHPLQNTWSLWFY-DNDRNKTWEE---NLIEVDHDLSFF*RTLLGDCTDA*SNVPSE 291
F +KHPL W+LWF W E N+I + F+ G + N S
Sbjct: 34 FNLKHPLARPWTLWFLMPPTPGLEWNELQKNIITFNSVEEFW-----GIHNNI--NPASS 86
Query: 292 LRQGHDYAVCKHGIRPMWEDDAR*MGGRW 378
L DY+ + G+RP WED GG+W
Sbjct: 87 LPIKSDYSFFREGVRPEWEDVHNKTGGKW 115
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 26.6 bits (56), Expect = 1.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 384 DEPSPTHLSCIIFPHGPDTMLANGIVMS 301
D PSP + CI++ G T L G+++S
Sbjct: 234 DPPSPEEICCIMYTSG-STGLPKGVILS 260
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.4 bits (53), Expect = 3.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 340 WAGYHACKRHSHVPDVTLT 284
W G +CK HSH D T++
Sbjct: 155 WIGDVSCKIHSHEEDATIS 173
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.4 bits (53), Expect = 3.1
Identities = 9/42 (21%), Positives = 22/42 (52%)
Frame = -3
Query: 144 QRVLYQEFRRHLCISVGFSLRRSRSFYIFCIIPSHVTRISRC 19
+ +LY + C+++G + Y+ + P+ V R+++C
Sbjct: 278 EAILYPQILHGECVAIGMVKEAELARYLGILKPNAVGRLTKC 319
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 25.0 bits (52), Expect = 4.1
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 154 WSLWFYDNDRNKTWEENLIEVDHD--LSFF*RTLLGDCTDA*SNVPSEL 294
W+ WF + KTW ++ D + SF + + + DA SN S L
Sbjct: 279 WNYWFTISTEEKTWLSQSVDADMNPVFSFEHLSFIWNYFDANSNAFSWL 327
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 24.6 bits (51), Expect = 5.5
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 9/49 (18%)
Frame = -2
Query: 304 VPDVTLTVRLTMHRY-NLPT-------TSVKKNSNRGQLLLD-SPPMFC 185
VPD+T TV +++ RY NL + T++++ S+ G+++++ S P C
Sbjct: 253 VPDITTTVPVSLSRYDNLSSWGMYNSPTNIRQVSSDGRVVVEVSIPKLC 301
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 118 PEFLIKHPLQNTWSLWFYDNDRNKTW 195
PE LI P TW W Y + + + W
Sbjct: 444 PETLISDPKIYTWWGWLYLDLKERRW 469
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 24.2 bits (50), Expect = 7.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 386 LMSHLPPIYLASSSH 342
+ S LPP YLAS SH
Sbjct: 89 IQSTLPPAYLASFSH 103
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 23.8 bits (49), Expect = 9.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 71 PSTSSVLFPAMSQESH 24
P ++VLF AM QE H
Sbjct: 7 PENTAVLFEAMKQEQH 22
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 23.8 bits (49), Expect = 9.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 310 SHVPDVTLTVRLTMHRYNLPTTSVKKNSNR 221
S V T+TV M RYN+P S +R
Sbjct: 180 SGVQSQTITVDRQMRRYNVPRISFVNKMDR 209
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 23.8 bits (49), Expect = 9.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 234 FLTDVVGRLYRCIVKRTVRVTSGT 305
F V+G LY C+ +R +R + T
Sbjct: 1556 FKESVIGALYLCLSRRAIRTGNVT 1579
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 23.8 bits (49), Expect = 9.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 141 RVLYQEFRRHLCISVGFSLRRSRSFYIFCIIPSHVTRIS 25
R+L Q + + + + F +R S FY CI P+H+ S
Sbjct: 564 RILKQLWPYIIAMILNFIVRSSFIFY--CIFPNHIQHSS 600
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 23.8 bits (49), Expect = 9.6
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 313 HSHVP-DVTLTVRLTMHRYNLPTTSVKKNSNRGQLLLDSPPM 191
HS P D+T T + NLP+T + ++ N D+P +
Sbjct: 379 HSDAPIDMTHTTTVISEAQNLPSTLLPQDGNAVHHDTDAPSL 420
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 23.8 bits (49), Expect = 9.6
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -1
Query: 62 SSVLFPAMSQESHGVGLVPI 3
+SV P++ ++SH G++PI
Sbjct: 235 NSVAKPSLVRQSHSAGVIPI 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,716,660
Number of Sequences: 5004
Number of extensions: 32602
Number of successful extensions: 96
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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