Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_K19
(386 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 44 6e-05
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 42 2e-04
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449... 32 0.14
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726... 30 0.74
04_01_0252 - 3329712-3331061 29 1.3
12_02_0566 - 20531659-20531696,20533101-20534094 29 1.7
06_01_0163 + 1273171-1273323,1273478-1273693 27 3.9
05_04_0337 - 20372378-20373094,20373320-20373379,20373992-203742... 27 5.2
12_02_0293 - 16985434-16986087 27 6.9
07_01_0704 - 5304639-5305571 27 6.9
03_05_0186 + 21731294-21732277 27 6.9
01_06_1119 - 34640611-34640721,34640995-34641075,34641437-346414... 27 6.9
11_01_0460 + 3561490-3564104,3564162-3564558 26 9.1
>01_07_0331 +
42804385-42804659,42806175-42806340,42806424-42806549,
42807142-42807207,42807645-42807698,42808843-42809019,
42809100-42809102
Length = 288
Score = 43.6 bits (98), Expect = 6e-05
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +1
Query: 136 HPLQNTWSLWFYDNDRNKTWEENLIEVDHDLSFF*RTLLGDCTDA*SNV--PSELRQGHD 309
HPL++ W+ WF DN + K+ + + F + + D +N+ PS+L G D
Sbjct: 52 HPLEHAWTFWF-DNPQGKSKQATWGSSIRPIHTF--STVEDFWSLYNNIHHPSKLVVGAD 108
Query: 310 YAVCKHGIRPMWEDDAR*MGGRW 378
+ K+ I P WED GG+W
Sbjct: 109 FHCFKNKIEPKWEDPICANGGKW 131
>03_02_0446 -
8567436-8567567,8567649-8567768,8569837-8569914,
8570018-8570122,8570214-8570306,8570464-8570619
Length = 227
Score = 41.5 bits (93), Expect = 2e-04
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Frame = +1
Query: 136 HPLQNTWSLWFYDND---RNKTWEENLIEVDHDLSFF*RTLLGDCTDA*SNVPSELRQGH 306
HPL+ + LW+ R++++E+N+ ++ D S + C P L
Sbjct: 49 HPLRRRFVLWYTRRTPGARSQSYEDNIKKIV-DFSTVESFWVCYCH---LTRPVSLPSPT 104
Query: 307 DYAVCKHGIRPMWEDDAR*MGGRWLI 384
D + K GIRP+WED A GG+W+I
Sbjct: 105 DLHLFKEGIRPLWEDPANRSGGKWII 130
>10_08_0323 +
16743358-16743566,16744536-16744704,16744834-16744959,
16745813-16745878,16745997-16746047
Length = 206
Score = 32.3 bits (70), Expect = 0.14
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 283 PSELRQGHDYAVCKHGIRPMWEDDAR*MGGRWLI 384
PS++ D+ + K G+ P WED GG+W +
Sbjct: 78 PSKVTVNADFHLFKAGVEPKWEDPECANGGKWTV 111
>09_06_0087 +
20771329-20771450,20771462-20771771,20771893-20772672,
20772854-20774002
Length = 786
Score = 29.9 bits (64), Expect = 0.74
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 252 GRLYRCIVKRTVRVTSGT*LCRLQAWYPAHVGR*CKIN 365
GR +RC+ ++ + + WYP H+ R CK++
Sbjct: 69 GRCFRCLGLGHLKASCSQPPTCYRCWYPGHIERNCKVD 106
>04_01_0252 - 3329712-3331061
Length = 449
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 352 HLPTWAGYHACKRHSHVPDVTLTVRLTMHRY 260
H TW + + R SHVP T+T+R RY
Sbjct: 144 HTITWNEFSSVFRRSHVPAGTITLRKREFRY 174
>12_02_0566 - 20531659-20531696,20533101-20534094
Length = 343
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 352 HLPTWAGYHACKRHSHVPDVTLTVRLTMHRY 260
H TW + + R SHVP +T+R RY
Sbjct: 144 HTTTWNEFSSVFRRSHVPSGMITLRKRAFRY 174
>06_01_0163 + 1273171-1273323,1273478-1273693
Length = 122
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 112 VPPEFLIKHPLQNTWSLWFYD 174
+P E+L+K P + TWS W +D
Sbjct: 98 LPAEYLVKRPRRRTWS-WRHD 117
>05_04_0337 -
20372378-20373094,20373320-20373379,20373992-20374266,
20374358-20374619
Length = 437
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 259 NLPTTSVKKNSNRGQLLLDSPP 194
+LP ++ +NSN QLL+ PP
Sbjct: 294 SLPASATTRNSNASQLLMPPPP 315
>12_02_0293 - 16985434-16986087
Length = 217
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 352 HLPTWAGYHACKRHSHVPDVTLTVRLTMHRY 260
H TW + + R SHVP +T+R RY
Sbjct: 144 HTITWNEFSSVFRRSHVPAGMITLRKREFRY 174
>07_01_0704 - 5304639-5305571
Length = 310
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 249 VGRLYRCIVKRTVRVTSG 302
+GRL + I+K+ VRVTSG
Sbjct: 247 LGRLLKQIIKKVVRVTSG 264
>03_05_0186 + 21731294-21732277
Length = 327
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 236 FDGRCWEIVPMHSQTYRQSYVRDMTM-PFASMVSGPC 343
FDG C++ +P +Y SY + M P+ ++ C
Sbjct: 172 FDGSCYKNLPYAEFSYNNSYQASLQMAPYEALYGRKC 208
>01_06_1119 -
34640611-34640721,34640995-34641075,34641437-34641496,
34641596-34641645,34641758-34641809,34642462-34642599,
34642716-34642979,34643057-34643114,34643178-34643287,
34643650-34643925
Length = 399
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 180 IVVVKPETPGVLQRVLYQEFRRH 112
I ++K E PG LQRV+ + +RH
Sbjct: 362 IAILKGEVPGRLQRVVPEILKRH 384
>11_01_0460 + 3561490-3564104,3564162-3564558
Length = 1003
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 257 IVPMHSQTYRQSYVRDMTMPFASMVS 334
I+P S ++QS V + +P ASM+S
Sbjct: 613 IIPFDSTKHKQSIVLKIVIPLASMLS 638
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,010,446
Number of Sequences: 37544
Number of extensions: 230858
Number of successful extensions: 531
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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