Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_K18
(440 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal pr... 137 3e-33
Z68749-4|CAA92959.2| 179|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z75525-3|CAA99762.3| 245|Caenorhabditis elegans Hypothetical pr... 27 4.6
Z93389-2|CAB07671.2| 355|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z75552-2|CAA99944.1| 894|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr... 27 8.0
AF022976-9|AAC69088.2| 404|Caenorhabditis elegans Hypothetical ... 27 8.0
AF016664-1|AAB66070.2| 324|Caenorhabditis elegans Serpentine re... 27 8.0
>AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 10 protein.
Length = 149
Score = 137 bits (332), Expect = 3e-33
Identities = 73/136 (53%), Positives = 87/136 (63%), Gaps = 5/136 (3%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 207
M +PK + IYEYLF EGV VAKKD++A HP++E + NL+VIK ++SL SR VKEQF
Sbjct: 1 MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60
Query: 208 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 387
AWRH+YWYLT+ GI YLR +L LP EIVPAT+K R V P A DR
Sbjct: 61 AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPH-EDRAPRAAQGEKGDRE 119
Query: 388 AYR-----RAPPAGAP 420
AYR A P GAP
Sbjct: 120 AYRTEKVTEAGPGGAP 135
>Z68749-4|CAA92959.2| 179|Caenorhabditis elegans Hypothetical
protein F56H11.2 protein.
Length = 179
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 138 LLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFWHQHLGQP-TFP 7
L+ + +FG ++ F++Y+ S + +DR TV H+ P +FP
Sbjct: 65 LVGVMIFGAVINFVNYYKSKKRQKELDRMTVESLLAHMALPESFP 109
>Z75525-3|CAA99762.3| 245|Caenorhabditis elegans Hypothetical
protein C03D6.5 protein.
Length = 245
Score = 27.5 bits (58), Expect = 4.6
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +1
Query: 118 KHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPA 297
+HPD+ KIP ++ L Y ++F + W++ NE + + + P + +
Sbjct: 78 EHPDISKIPVEDIVGVSVLLLRCKYNDQEFI--NMGWFVANEYTDE-ELKENPPAKPLIE 134
Query: 298 TLKRSVRTETVR 333
L R + TE +R
Sbjct: 135 KLSRKIETEDLR 146
>Z93389-2|CAB07671.2| 355|Caenorhabditis elegans Hypothetical
protein T13F3.3 protein.
Length = 355
Score = 26.6 bits (56), Expect = 8.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 287 ISGGKCRKILRYSIPSFVKYQ*KCLHANCSLTYPLDLSDC 168
+S G C R S+ S +KYQ K C + Y LD C
Sbjct: 28 LSCGACASFFRRSVVSKIKYQCKDGKKRCQIRY-LDRHFC 66
>Z75552-2|CAA99944.1| 894|Caenorhabditis elegans Hypothetical
protein W04D2.1b protein.
Length = 894
Score = 26.6 bits (56), Expect = 8.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 344 LAGLMLQHEQLKIDQLIGAHHQLE 415
LA L++ HE +I++L+ AH Q +
Sbjct: 537 LADLVIVHEMREIEELVNAHDQFK 560
>Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical
protein W04D2.1a protein.
Length = 920
Score = 26.6 bits (56), Expect = 8.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 344 LAGLMLQHEQLKIDQLIGAHHQLE 415
LA L++ HE +I++L+ AH Q +
Sbjct: 563 LADLVIVHEMREIEELVNAHDQFK 586
>Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical
protein W08D2.6 protein.
Length = 358
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 337 GAVGRPDAPARTAEDRSAYRRAPP 408
G+V R PAR A D Y+ APP
Sbjct: 76 GSVFRARRPARGAYDEGDYKEAPP 99
>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical
protein ZK512.3 protein.
Length = 1418
Score = 26.6 bits (56), Expect = 8.0
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1
Query: 200 SLTYPLDLSDCIALITWRLGIFSRSG 123
S YPL L+DC LIT +L + S SG
Sbjct: 293 SQLYPLGLADCYTLIT-KLLVSSNSG 317
>AF022976-9|AAC69088.2| 404|Caenorhabditis elegans Hypothetical
protein R11G11.14 protein.
Length = 404
Score = 26.6 bits (56), Expect = 8.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 55 KHGFVLASTSWTTNFP 8
+HG + AST WT N P
Sbjct: 79 QHGLLCASTDWTMNLP 94
>AF016664-1|AAB66070.2| 324|Caenorhabditis elegans Serpentine
receptor, class i protein77 protein.
Length = 324
Score = 26.6 bits (56), Expect = 8.0
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 142 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP--EIVPATLKRS 312
P +QV+ + + ++ E F W+ T+ I + +F+ PP +I+ LK++
Sbjct: 257 PMIQVLILVFEIPQMNFISELI----FAWFATHSSINMVSLFIFFPPYRKIIAKGLKKT 311
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,828,099
Number of Sequences: 27780
Number of extensions: 193163
Number of successful extensions: 634
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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