Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K16
         (256 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    26   0.91 
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   1.2  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   1.6  
SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomy...    24   2.8  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    24   2.8  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    24   2.8  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    24   3.7  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    24   3.7  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    23   4.9  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    23   4.9  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    23   4.9  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    23   6.4  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    23   6.4  
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    23   8.5  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    23   8.5  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    23   8.5  
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc...    23   8.5  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    23   8.5  

>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 0.91
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -3

Query: 155 KGEVVQWHHSLPLHRALAGQPQANHQSHKHLADHMLYQEDFHILGR 18
           KG    W   +P+ R L           K LA+H L Q  FH+ G+
Sbjct: 131 KGAFEYWAARIPIGRVLF--EIGGDGMRKELAEHALKQAAFHLPGK 174


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 119 LHRALAGQPQANHQSHKHLADHM 51
           +HRA+   P AN+ + +HL  H+
Sbjct: 618 VHRAINDLPDANYSTIRHLTIHL 640


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 6/14 (42%), Positives = 13/14 (92%)
 Frame = -3

Query: 65  LADHMLYQEDFHIL 24
           + +H++YQ+DFH++
Sbjct: 296 IIEHLIYQKDFHLI 309


>SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +2

Query: 131 DAIEQLHLSVKDSFNKFKGKFLTGSVDFSDRLSRKSRIGFR 253
           + +E+ H +   S    KGK       F D     SR+GF+
Sbjct: 266 ELLEEKHSNFGYSEGIIKGKMQVAQSGFDDGFKHGSRLGFQ 306


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 125  LPLHRALAGQPQANHQSHKHLAD 57
            LP      G  QANHQS + ++D
Sbjct: 1031 LPFQSLCPGGKQANHQSSEKMSD 1053


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 222 LSEKSTEPVRNFPLNLLNESLTER 151
           LSE   E ++N P +L+N+ L E+
Sbjct: 560 LSEAFVEKIQNGPKHLMNKGLIEK 583


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = +3

Query: 96  LTSQSPMKRKRMMPLNNF 149
           +T++ P+K++R+  L+NF
Sbjct: 76  MTNRKPLKQRRLFQLHNF 93


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 149 EVVQWHHSLPLHRALAGQPQANHQSHKHL 63
           +++Q+H +  +   +AGQPQA  +S + L
Sbjct: 300 QLLQFHVATYMDNEIAGQPQALQKSGRPL 328


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 138  LNNFTFLSRIHSISLKENF*LVQ 206
            L N +FLSR+   SL+EN   +Q
Sbjct: 1014 LQNNSFLSRVSPSSLEENVFYIQ 1036


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 50  AYDQPDVYETGD 85
           A+D PDVY+ GD
Sbjct: 537 AFDAPDVYDFGD 548


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 107 LAGQPQANHQSHKHLADHMLYQEDF 33
           ++G P  N  S  HL  H L   DF
Sbjct: 103 VSGSPNTNDLSSGHLLHHTLGTHDF 127


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 76  LINIWLIICYTRKIFI 29
           L+  W I+CYT  I++
Sbjct: 53  LVRGWYIVCYTLAIYL 68


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 252  LNPILDFLLSLSEKST 205
            LN +LD LLSLS  ST
Sbjct: 998  LNKLLDSLLSLSNPST 1013


>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -3

Query: 107 LAGQPQANHQSHKHLADHMLYQEDF 33
           ++G P  N     HL  H L   DF
Sbjct: 108 ISGSPNTNDIGSSHLLHHTLGTHDF 132


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 92  QANHQSHKHLADHMLYQEDFH 30
           +AN      L D++L +EDFH
Sbjct: 79  EANRDDCDKLDDYVLCKEDFH 99


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 131 HSLPLHRALAGQPQANHQSHKHLADHMLYQED 36
           HSLPL     G  + NH S    + + L Q +
Sbjct: 150 HSLPLSGCSIGPVRTNHSSSLSNSSNSLLQTE 181


>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 290

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 89  ANHQSHKHLADHMLYQEDFHILGR 18
           ANH  H +  D  +  ED+  +GR
Sbjct: 193 ANHSVHSNAEDINIINEDYIEIGR 216


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -1

Query: 91  RQITSLINIWLIICYT 44
           RQI  ++++W ++ YT
Sbjct: 130 RQIEDIVSVWAVLDYT 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 942,250
Number of Sequences: 5004
Number of extensions: 13961
Number of successful extensions: 52
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)