Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K16
         (256 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240...    29   0.39 
07_03_0823 + 21765960-21766064,21766166-21766327,21766616-217667...    26   3.6  
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108...    25   8.4  
04_04_0347 + 24564589-24565296                                         25   8.4  

>09_06_0244 +
           21822811-21823246,21823337-21823468,21823949-21824037,
           21824135-21824224,21825033-21825603,21826097-21826734,
           21826978-21827098,21827223-21827337,21828234-21829723,
           21829830-21829901,21830151-21830196,21830413-21830515,
           21830591-21830674,21831035-21831475,21831651-21831746,
           21831896-21832045,21832131-21832274,21832414-21832527,
           21832621-21832803,21832901-21832945,21833058-21833192
          Length = 1764

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 137 WHHSLPLHRALAGQPQANHQSHKHLADHMLYQEDFHILGRP 15
           +  S+ LH A +  P     S  +LA+HM++  + + + RP
Sbjct: 333 YRKSVGLHEAFSKNPAIQQSSKINLANHMIHDMNMNSISRP 373


>07_03_0823 +
           21765960-21766064,21766166-21766327,21766616-21766741,
           21766831-21766956,21767519-21767698,21768204-21768452
          Length = 315

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
 Frame = +2

Query: 131 DAIEQLHLSVKD------SFNKFKGKFLTGSVDFS 217
           DA+ QL + +KD      SF K+K + L G +D+S
Sbjct: 177 DALNQLEIGLKDNLKKLSSFEKYKQQVLLGHLDWS 211


>05_01_0160 +
           1081416-1081647,1081840-1082012,1082169-1082246,
           1082372-1082529,1082558-1082709,1083232-1083290,
           1083633-1083912,1084235-1084470,1084601-1084744,
           1084845-1085012
          Length = 559

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 125 LPLHRALAGQPQANHQSHKHLADHMLYQEDF--HILGRPY 12
           +PL R+ +G   +  + H+    H L+Q  F  H+ G P+
Sbjct: 257 MPLSRSSSGWGDSPEKLHQECLVHTLFQRPFSCHVDGCPF 296


>04_04_0347 + 24564589-24565296
          Length = 235

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = -3

Query: 158 QKGEVVQWHHSLPLHRALA-GQPQANHQSHKHLADH 54
           Q  +  +WHH  P    +   +P  +H  H H   H
Sbjct: 68  QPAQAPEWHHHAPAPAPVRDDKPSPSHHHHHHGHHH 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,547,185
Number of Sequences: 37544
Number of extensions: 78664
Number of successful extensions: 249
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)