Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K16
         (256 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC014083-1|AAH14083.1|  401|Homo sapiens DCTN2 protein protein.        65   3e-11
BC009468-1|AAH09468.1|  401|Homo sapiens DCTN2 protein protein.        65   3e-11
BC000718-1|AAH00718.1|  401|Homo sapiens DCTN2 protein protein.        65   3e-11
AY189155-1|AAO34395.1|  387|Homo sapiens p50 dynamitin protein.        64   1e-10
U50733-1|AAC50423.1|  406|Homo sapiens dynamitin protein.              61   5e-10
AK222693-1|BAD96413.1|  406|Homo sapiens dynactin 2 variant prot...    61   5e-10

>BC014083-1|AAH14083.1|  401|Homo sapiens DCTN2 protein protein.
          Length = 401

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
 Frame = +2

Query: 14  MADPKYENLPGIAYDQPDVYETGDL-XXXXXXXXXXXXXNDAIEQLHLSVKDSFNKFKGK 190
           MADPKY +LPGIA ++PDVYET DL              + ++E + ++   +++KFK K
Sbjct: 1   MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK 60

Query: 191 FL-TGSVDFSDRLSRKSRIGFRS 256
            + T  +DFSDR+ +  R G+ S
Sbjct: 61  RVGTKGLDFSDRIGKTKRTGYES 83


>BC009468-1|AAH09468.1|  401|Homo sapiens DCTN2 protein protein.
          Length = 401

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
 Frame = +2

Query: 14  MADPKYENLPGIAYDQPDVYETGDL-XXXXXXXXXXXXXNDAIEQLHLSVKDSFNKFKGK 190
           MADPKY +LPGIA ++PDVYET DL              + ++E + ++   +++KFK K
Sbjct: 1   MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK 60

Query: 191 FL-TGSVDFSDRLSRKSRIGFRS 256
            + T  +DFSDR+ +  R G+ S
Sbjct: 61  RVGTKGLDFSDRIGKTKRTGYES 83


>BC000718-1|AAH00718.1|  401|Homo sapiens DCTN2 protein protein.
          Length = 401

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
 Frame = +2

Query: 14  MADPKYENLPGIAYDQPDVYETGDL-XXXXXXXXXXXXXNDAIEQLHLSVKDSFNKFKGK 190
           MADPKY +LPGIA ++PDVYET DL              + ++E + ++   +++KFK K
Sbjct: 1   MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK 60

Query: 191 FL-TGSVDFSDRLSRKSRIGFRS 256
            + T  +DFSDR+ +  R G+ S
Sbjct: 61  RVGTKGLDFSDRIGKTKRTGYES 83


>AY189155-1|AAO34395.1|  387|Homo sapiens p50 dynamitin protein.
          Length = 387

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
 Frame = +2

Query: 14  MADPKYENLPGIAYDQPDVYETGDL---XXXXXXXXXXXXXNDAIEQLHLSVKDSFNKFK 184
           MADPKY +LPGIA ++PDVYET DL                + ++E + ++   +++KFK
Sbjct: 1   MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAELEELTSTSVEHIIVNPNAAYDKFK 60

Query: 185 GKFL-TGSVDFSDRLSRKSRIGFRS 256
            K + T  +DFSDR+ +  R G+ S
Sbjct: 61  DKRVGTKGLDFSDRIGKTKRTGYES 85


>U50733-1|AAC50423.1|  406|Homo sapiens dynamitin protein.
          Length = 406

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
 Frame = +2

Query: 14  MADPKYENLPGIAYDQPDVYETGDL------XXXXXXXXXXXXXNDAIEQLHLSVKDSFN 175
           MADPKY +LPGIA ++PDVYET DL                   + ++E + ++   +++
Sbjct: 1   MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAFAQELEELTSTSVEHIIVNPNAAYD 60

Query: 176 KFKGKFL-TGSVDFSDRLSRKSRIGFRS 256
           KFK K + T  +DFSDR+ +  R G+ S
Sbjct: 61  KFKDKRVGTKGLDFSDRIGKTKRTGYES 88


>AK222693-1|BAD96413.1|  406|Homo sapiens dynactin 2 variant
           protein.
          Length = 406

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
 Frame = +2

Query: 14  MADPKYENLPGIAYDQPDVYETGDL------XXXXXXXXXXXXXNDAIEQLHLSVKDSFN 175
           MADPKY +LPGIA ++PDVYET DL                   + ++E + ++   +++
Sbjct: 1   MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAFAQELEELTSTSVEHIIVNPNAAYD 60

Query: 176 KFKGKFL-TGSVDFSDRLSRKSRIGFRS 256
           KFK K + T  +DFSDR+ +  R G+ S
Sbjct: 61  KFKDKRVGTKGLDFSDRIGKTKRTGYES 88


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,430,267
Number of Sequences: 237096
Number of extensions: 474514
Number of successful extensions: 1126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 76,859,062
effective HSP length: 62
effective length of database: 62,159,110
effective search space used: 1367500420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)