Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K16
         (256 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical p...    25   5.6  
Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical p...    25   5.6  
U40941-4|AAA81709.1|  771|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z81537-11|CAB04377.2|  329|Caenorhabditis elegans Hypothetical p...    25   9.8  

>Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical
           protein C41C4.5b protein.
          Length = 887

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 158 QKGEV-VQWHHSLPLHRALAGQPQANHQS 75
           +KG +  Q HHS+P+HRA        H+S
Sbjct: 727 RKGSISAQSHHSVPVHRASRVSLNTLHKS 755


>Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical
           protein C41C4.5a protein.
          Length = 849

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 158 QKGEV-VQWHHSLPLHRALAGQPQANHQS 75
           +KG +  Q HHS+P+HRA        H+S
Sbjct: 689 RKGSISAQSHHSVPVHRASRVSLNTLHKS 717


>U40941-4|AAA81709.1|  771|Caenorhabditis elegans Hypothetical
           protein F35C8.7a protein.
          Length = 771

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 170 MNP*QKGEVVQWHHSLPLHRALAGQP-QANH 81
           M+P +   V   HH  PLH+A   QP  ANH
Sbjct: 29  MSPSRMDGVYPSHHVPPLHQAYHVQPASANH 59


>Z81537-11|CAB04377.2|  329|Caenorhabditis elegans Hypothetical
           protein F41D3.6 protein.
          Length = 329

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 68  HLADHMLYQEDFHIL 24
           H+ADH+ YQ+D  I+
Sbjct: 239 HIADHLDYQKDIRIM 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,974,903
Number of Sequences: 27780
Number of extensions: 72751
Number of successful extensions: 231
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)