Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K15
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    28   0.52 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   0.69 
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   3.7  
SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce...    25   4.9  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    24   8.5  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    24   8.5  

>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.9 bits (59), Expect = 0.52
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 262 QRAPSRKTYARDIAPPAASLGTLHDGS 182
           Q +P R TY+R    P+AS+  L DGS
Sbjct: 430 QVSPKRPTYSRSSPLPSASVPALGDGS 456


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.5 bits (58), Expect = 0.69
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 232  ARMSFYWGLSVPILLYLLRLFIFNCDAF 315
            AR+  Y+ LS+P L Y + LF+    AF
Sbjct: 2038 ARLPSYYVLSIPWLFYAVALFLVGLPAF 2065


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 103 IRACYKLKDTVLHPSIKI 156
           + +CYKLK  VLH S+ +
Sbjct: 448 LTSCYKLKKLVLHDSLAL 465


>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 168

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 183 PVGLEIFNLNFNTW 142
           P G+ I+ LNF+TW
Sbjct: 66  PAGMAIYFLNFSTW 79


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 257 SLYPSYFIYYAFSSLIVTHL*SCVEVINKDFA 352
           +L  S F YY+ +S+    + SC E+    FA
Sbjct: 387 NLVHSLFDYYSLNSIYFQMIVSCSEIDRSSFA 418


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 211 LQAELCLARMSFYWGLSVPILLYLLRLF 294
           L  +L LA  + Y  L +P+L  +L+LF
Sbjct: 847 LTCDLVLAPDAIYENLIIPLLTCILKLF 874


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,281,018
Number of Sequences: 5004
Number of extensions: 20647
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)