Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K15
         (365 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0486 - 4047055-4049013                                           28   2.0  
12_01_1067 - 11009508-11010071,11010122-11010679                       28   2.6  
11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510     27   3.4  
10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106,782...    27   6.0  

>05_01_0486 - 4047055-4049013
          Length = 652

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +2

Query: 131 LYYIQVLKFKLKISSPTGTIXXXXXXXXXXXXXXXXCLSTG--GSLYPSYFIYYAFSSL 301
           LY I  L F L+  S +G +                 LSTG  G L   YF++Y FSS+
Sbjct: 593 LYSINYLVFDLR--SLSGPVSATLYLGYSLIMALAIMLSTGAIGFLLSFYFVHYLFSSV 649


>12_01_1067 - 11009508-11010071,11010122-11010679
          Length = 373

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2

Query: 250 SRKTYARDIAPPAASLGTLHDGSSGTRDF*FKF*YLDVIQCLSICNKP 107
           ++KT  + +AP A ++      S G  DF  K   + + Q    C KP
Sbjct: 2   AKKTLCKFVAPSAGNMPDGTHASMGDGDFDMKISLVKMAQACPFCGKP 49


>11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510
          Length = 964

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 272 RMGTESPQ*KDIRARHSSACSVSRNVTRWFQW 177
           R+ T  P+  D+ AR    CS+  ++TR F W
Sbjct: 783 RVVTMEPRDLDVLARMPELCSLRLDITRRFPW 814


>10_05_0011 -
           7822847-7822880,7823653-7823754,7823859-7824106,
           7824195-7824240,7824368-7825984,7826673-7826797,
           7826915-7829083
          Length = 1446

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 223 APPAASLGTLHDGSSGT 173
           APP+A     HDGSSGT
Sbjct: 386 APPSAQPSPSHDGSSGT 402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,099,970
Number of Sequences: 37544
Number of extensions: 128558
Number of successful extensions: 245
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)