Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K15
         (365 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084196-7|AAK29949.2|  284|Caenorhabditis elegans Hypothetical ...    29   1.0  
Z70203-1|CAA94104.1|  456|Caenorhabditis elegans Hypothetical pr...    28   1.8  
Z70208-4|CAC42306.1|  879|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical pr...    26   7.2  
AF200707-1|AAF15884.1|  879|Caenorhabditis elegans UNC-84B protein.    26   7.2  
AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein.    26   7.2  

>AC084196-7|AAK29949.2|  284|Caenorhabditis elegans Hypothetical
           protein Y55D5A.6 protein.
          Length = 284

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 202 RETLQAELCLARMSFYWGLSVPILLYLLRL 291
           R T Q E C+  + +Y GLS  ++ YL+ +
Sbjct: 243 RATSQTEFCMPDVIYYLGLSTVVICYLITI 272


>Z70203-1|CAA94104.1|  456|Caenorhabditis elegans Hypothetical
           protein C05G5.1 protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 156 NFNTWM*YSVFQFVTSPYYTNA 91
           N NTW+ Y+   F T+ YY+N+
Sbjct: 30  NGNTWITYAAITFYTNNYYSNS 51


>Z70208-4|CAC42306.1|  879|Caenorhabditis elegans Hypothetical
           protein F54B11.3b protein.
          Length = 879

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 292 KGVVNKVGWVQRAPSRKTYARDIAPPAASLGTLHD 188
           K    K+   Q+AP    + RDI  PA S   +HD
Sbjct: 416 KSAYMKLTNYQQAPMETIHVRDINEPAPSSSDVHD 450


>Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical
           protein F54B11.3a protein.
          Length = 1111

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 292 KGVVNKVGWVQRAPSRKTYARDIAPPAASLGTLHD 188
           K    K+   Q+AP    + RDI  PA S   +HD
Sbjct: 416 KSAYMKLTNYQQAPMETIHVRDINEPAPSSSDVHD 450


>AF200707-1|AAF15884.1|  879|Caenorhabditis elegans UNC-84B protein.
          Length = 879

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 292 KGVVNKVGWVQRAPSRKTYARDIAPPAASLGTLHD 188
           K    K+   Q+AP    + RDI  PA S   +HD
Sbjct: 416 KSAYMKLTNYQQAPMETIHVRDINEPAPSSSDVHD 450


>AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein.
          Length = 1111

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 292 KGVVNKVGWVQRAPSRKTYARDIAPPAASLGTLHD 188
           K    K+   Q+AP    + RDI  PA S   +HD
Sbjct: 416 KSAYMKLTNYQQAPMETIHVRDINEPAPSSSDVHD 450


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,098,083
Number of Sequences: 27780
Number of extensions: 116907
Number of successful extensions: 211
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)