Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K14
         (47 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...    23   4.6  
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...    23   4.6  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    23   6.1  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
          L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 21 MGRRPARCY 47
          M RRPARCY
Sbjct: 1  MARRPARCY 9


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
          L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 21 MGRRPARCY 47
          M RRPARCY
Sbjct: 1  MARRPARCY 9


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 47  ITSRWSAPHC 18
           I SRW  PHC
Sbjct: 497 IKSRWEIPHC 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,541
Number of Sequences: 5004
Number of extensions: 664
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 2,362,478
effective HSP length: 0
effective length of database: 2,362,478
effective search space used: 35437170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)