Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K14
         (47 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    19   6.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    19   6.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    18   8.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              18   8.1  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 2  SLCGEHNGAPTSEML 46
          SLCG H     +E+L
Sbjct: 49 SLCGRHEKRLLNELL 63


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 2  SLCGEHNGAPTSEML 46
          SLCG H     +E+L
Sbjct: 49 SLCGRHEKRLLNELL 63


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +1

Query: 4   ALWRTQW 24
           ALW T+W
Sbjct: 579 ALWPTEW 585


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 29  APHCVLHKA 3
           A HC LH+A
Sbjct: 126 ANHCELHRA 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,285
Number of Sequences: 438
Number of extensions: 61
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 0
effective length of database: 146,343
effective search space used:  2195145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)