Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K13
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   0.77 
SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.4  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   5.5  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    25   5.5  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    24   7.2  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    24   7.2  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    24   9.5  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    24   9.5  

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 27.5 bits (58), Expect = 0.77
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 37   ESRYLKLCAKTRLVPAILIQGVDYLAAISMEMFS*VTVVTF 159
            ++R + L A   L+  ++ +G DY  A  ME F+ +  VTF
Sbjct: 1132 KARLISLKAWLHLMKYVIKEGTDYELAQGMEWFNSILKVTF 1172


>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 249

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
 Frame = +3

Query: 42  TISEVVCKNE--ISPC-----DIDPGSRLFSSDFDGNVLIGDCSHFLDKDLELILQ 188
           T+S  +CK+   +  C      + P  +++   FD  + I DC ++ +K ++ +LQ
Sbjct: 97  TVSVAICKHALFVDKCRSISNKLGPREQVYLVGFDTLIRILDCKYYKEKAMQQVLQ 152


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 146 VTYENISIEIAAK*STPWINIAGTN 72
           + Y  + +E  AK +  WIN+A  N
Sbjct: 147 IVYSKLEVETLAKITPIWINVAKKN 171


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 124 SKSLLNNRLPGSISQGLISFLHT 56
           ++S LNN  PGS    ++SF H+
Sbjct: 173 NESCLNNAAPGSPEVAVLSFRHS 195


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 210 MSHHSTSVVGLILNLYLKSDYSHL 139
           +SH+  S   LIL LY K+D++ L
Sbjct: 509 LSHNYGSRAPLILELYSKTDFNKL 532


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 273 ILLREVTEESRLHHVNWSWEKLYEAGV 353
           +L++EVT    L +V   W+ +Y AGV
Sbjct: 199 LLIKEVTRRCHLENV---WQAVYTAGV 222



 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 273 ILLREVTEESRLHHVNWSWEKLYEAG 350
           +LL      SR  H + +W+KLY+ G
Sbjct: 222 VLLPSPVSLSRYMHRSLNWKKLYDIG 247


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -3

Query: 281 QQYFAGNFFNKCAFVVPINHSSLTCLTT 198
           ++    +  N C  ++ +N SS TC  T
Sbjct: 9   EKQLTSDIVNNCDLIIEVNASSKTCQET 36


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -3

Query: 368 IYLVMHTSLIKFLPTPIHVMQPAFFSYFSQQYFAGNFFNKCAF-VVPINHS 219
           +YL   T+   + P+ I+ +  + F Y    Y AG  F    F ++ +N +
Sbjct: 295 LYLTTKTTEGYYCPSMIYPLSKSSFQYIIFHYAAGLLFINSDFKIISLNEA 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,670,943
Number of Sequences: 5004
Number of extensions: 31725
Number of successful extensions: 82
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)