Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_K13
(391 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1460 - 30312640-30313116,30313457-30313708,30313808-303139... 29 1.7
05_06_0043 + 25143513-25143866,25144010-25144191,25144284-251443... 28 3.0
07_03_0708 - 20865786-20867153 27 4.0
04_03_0922 + 20834195-20836603 27 4.0
01_06_0068 + 26163623-26163740,26163749-26165274 27 5.3
04_03_0911 + 20767041-20767047,20767119-20769322 27 7.0
03_05_0105 - 20861130-20861384,20861472-20862262,20862364-208626... 27 7.0
05_03_0038 + 7612866-7613132,7615691-7616608 26 9.2
03_05_0496 - 24920645-24920655,24921388-24921547,24921788-249218... 26 9.2
02_05_1325 - 35708046-35708207,35708297-35708374,35708466-357085... 26 9.2
01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038 26 9.2
>06_03_1460 -
30312640-30313116,30313457-30313708,30313808-30313938,
30314037-30314322
Length = 381
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 46 YLKLCAKTRLVPAILIQGVDYLAA 117
YL L A+ LVPA L+ GV+Y +A
Sbjct: 108 YLVLKARNYLVPAALVMGVNYASA 131
>05_06_0043 +
25143513-25143866,25144010-25144191,25144284-25144374,
25144452-25144568,25144922-25144976,25145008-25145093,
25145190-25145300,25145564-25145608,25145695-25145740,
25146078-25146152,25146902-25146971,25147128-25147437,
25147778-25147851,25147996-25148151,25148416-25148539
Length = 631
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 1 AQALYHTRILVAESRYLKLCAKTRLVPAILIQGVDYLAAIS 123
A L+ + ES LKLCA R + L++G D+ A ++
Sbjct: 339 AGELFVQNLFFDESFALKLCADDRNLAVTLLKGADWFAILN 379
>07_03_0708 - 20865786-20867153
Length = 455
Score = 27.5 bits (58), Expect = 4.0
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = -3
Query: 329 PTPIHVMQPAFFSYFSQQYFAGNFFNKCAFVVPINHSSLTCLTTA 195
PTP V+QPA S FS+ G+F C + +P + TC TA
Sbjct: 129 PTPAPVLQPARSSTFSRLPCNGSF---CQY-LPTSSRPRTCNATA 169
>04_03_0922 + 20834195-20836603
Length = 802
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 60 CKNEISPCDIDPGSRLFSSDFDGNVLIGDCSHFLDKDLELILQQM 194
C++ I CD+ P + L S F + + FL +D +L M
Sbjct: 619 CRDCIIHCDVKPQNILLSESFTPKIADFGMAKFLGRDFSRVLTTM 663
>01_06_0068 + 26163623-26163740,26163749-26165274
Length = 547
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 60 CKNEISPCDIDPGSRLFSSDFDGNVLIGDCSHFLDKDL 173
CKN+I DI P + L DF +V S + +DL
Sbjct: 346 CKNQILHLDIKPANILLDGDFRAHVSDFGISMSIGRDL 383
>04_03_0911 + 20767041-20767047,20767119-20769322
Length = 736
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 60 CKNEISPCDIDPGSRLFSSDFDGNVLIGDCSHFLDKDLELILQQM 194
C++ I CDI P + L S F V + FL +D ++ M
Sbjct: 553 CRDCIIHCDIKPENILLDSSFTPKVADFGMAKFLGRDFSHVVTTM 597
>03_05_0105 -
20861130-20861384,20861472-20862262,20862364-20862618,
20862713-20862827,20862959-20863011,20863113-20863373,
20863699-20863749,20863863-20864114,20864504-20864726,
20865317-20865460
Length = 799
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/50 (26%), Positives = 18/50 (36%)
Frame = -3
Query: 335 FLPTPIHVMQPAFFSYFSQQYFAGNFFNKCAFVVPINHSSLTCLTTAHLL 186
F TPI + P F + CAF + SL+C +L
Sbjct: 362 FAATPISLFWPTFIMAIAASIIGSQAMISCAFATVSHLQSLSCFPRVKIL 411
>05_03_0038 + 7612866-7613132,7615691-7616608
Length = 394
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +3
Query: 219 TMIYRDNESALVKEISCKILLREVTEESRLHHVNWSWEKLYEAGVHHK---VYTQYI 380
+ + D +++ + +S +LLR R H ++ WE++ A + +K VY +I
Sbjct: 189 SFVPNDGDASSMNHLSRTMLLRFDPPPHRFHVYHFVWEEIRMASIQYKKGLVYAPHI 245
>03_05_0496 -
24920645-24920655,24921388-24921547,24921788-24921828,
24922029-24922521,24923503-24923616,24925728-24925955,
24926405-24926650,24927690-24927831,24929263-24929354
Length = 508
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 353 HTSLIKFLPTPIHVMQPAFFSY 288
H S+ FLPTP H++ P S+
Sbjct: 7 HASINDFLPTPPHLLLPMELSF 28
>02_05_1325 -
35708046-35708207,35708297-35708374,35708466-35708512,
35708731-35708839
Length = 131
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 159 LDKDLELILQQMCCGETCQATMIYRDNESALVKEISCKILLRE 287
LD+++ +I+ C E ++ R ESA +KEI ++ E
Sbjct: 52 LDRNVHMIITDYCMPEMTGFDLLKRVKESAELKEIPVVLMSSE 94
>01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038
Length = 650
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 60 CKNEISPCDIDPGSRLFSSDFDGNVLIGDCSHFLDKDLELILQQM 194
C++ I CDI P + L S F V + L +D +L M
Sbjct: 465 CRDCIIHCDIKPQNILLDSSFTPKVADFGMAKLLGRDFSRVLTSM 509
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,320,885
Number of Sequences: 37544
Number of extensions: 188506
Number of successful extensions: 503
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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