Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K13
         (391 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L38518-1|AAA62179.1|  462|Homo sapiens sonic hedgehog protein pr...    31   1.8  
AY422195-1|AAQ87879.1|  462|Homo sapiens sonic hedgehog homolog ...    31   1.8  
AC078834-2|AAS01990.1|  462|Homo sapiens unknown protein.              31   1.8  
AF103310-1|AAD20479.1|  121|Homo sapiens immunoglobulin heavy ch...    28   9.3  

>L38518-1|AAA62179.1|  462|Homo sapiens sonic hedgehog protein
           protein.
          Length = 462

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 84  DIDPGSRLFSSDFDGNVLIGDCSHFLDKD 170
           D+ PG R+ ++D  G +L  D   FLD+D
Sbjct: 217 DLSPGDRVLAADDQGRLLYSDFLTFLDRD 245


>AY422195-1|AAQ87879.1|  462|Homo sapiens sonic hedgehog homolog
           (Drosophila) protein.
          Length = 462

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 84  DIDPGSRLFSSDFDGNVLIGDCSHFLDKD 170
           D+ PG R+ ++D  G +L  D   FLD+D
Sbjct: 217 DLSPGDRVLAADDQGRLLYSDFLTFLDRD 245


>AC078834-2|AAS01990.1|  462|Homo sapiens unknown protein.
          Length = 462

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 84  DIDPGSRLFSSDFDGNVLIGDCSHFLDKD 170
           D+ PG R+ ++D  G +L  D   FLD+D
Sbjct: 217 DLSPGDRVLAADDQGRLLYSDFLTFLDRD 245


>AF103310-1|AAD20479.1|  121|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 121

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 95  WINIAGTNLVFAHNFRYRDSATR 27
           WI +A TN  FA NF+ R + TR
Sbjct: 43  WIVVASTNTKFAQNFQERVTMTR 65


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,969,013
Number of Sequences: 237096
Number of extensions: 1037921
Number of successful extensions: 2070
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2070
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2698607930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)