Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K13
         (391 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    25   0.41 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   1.2  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    21   3.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.0  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   5.0  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   5.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   8.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   8.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   8.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   8.7  

>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 24.6 bits (51), Expect = 0.41
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 228 YRDNESALVKEISCKILLREVTEESRLHHVNWSW 329
           Y D +   ++    KI LR  T+E RL H   +W
Sbjct: 10  YHDEKFKQLRNEDNKIDLRSRTKEERLQHRREAW 43


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 57  VCKNEISPCDIDPGSRLFS 113
           VC+  I P + DPG+ L S
Sbjct: 469 VCEKTIIPYEFDPGAFLLS 487


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 354 AHQPHKVSPNSNSRDAT 304
           A  PH +SPN  + D+T
Sbjct: 8   AQLPHHLSPNMPTMDST 24


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 198 CGETCQATMIYRDNESALVKEISCKIL 278
           CG     TMI  D  + +VK +S K L
Sbjct: 137 CGSIWTMTMIAFDRYNVIVKGLSGKPL 163


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 198 CGETCQATMIYRDNESALVKEISCKIL 278
           CG     TMI  D  + +VK +S K L
Sbjct: 103 CGSIWTMTMIAFDRYNVIVKGLSGKPL 129


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 198 CGETCQATMIYRDNESALVKEISCKIL 278
           CG     TMI  D  + +VK +S K L
Sbjct: 13  CGSIWTMTMIAFDRYNVIVKGLSGKPL 39


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 374 LCIYLVMHTSLIKFLPTPIH 315
           LCI LV    LI F+P  I+
Sbjct: 403 LCISLVYIIMLIIFIPRNIY 422


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 15  PYEDSRCRITISEVVCKNE 71
           PY+  RCRI     V   E
Sbjct: 177 PYDTHRCRINFGSWVHSGE 195


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +3

Query: 336 LYEAGVHHKVYTQY 377
           L E+ +HH+++TQ+
Sbjct: 163 LVESQMHHQMHTQH 176


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 335  FLPTPIHVMQPAFFSYFSQQYFA 267
            F+P+P     P   +   +QYFA
Sbjct: 1169 FMPSPFMAGAPNVPTILPEQYFA 1191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,389
Number of Sequences: 438
Number of extensions: 2097
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)