Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K12
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||...    29   0.25 
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    28   0.59 
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    27   1.4  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    24   7.2  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    24   9.5  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    24   9.5  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    24   9.5  

>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 280

 Score = 29.1 bits (62), Expect = 0.25
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
 Frame = +2

Query: 266 AASAKSWRRGGAPGEKDKEESAWRTKGEY--KDPEKTSEPWRP 388
           A  A + R      E DKE      K  Y  K PE   EPW+P
Sbjct: 98  AEQAAAERESKLQEESDKETPVMLNKSHYVAKTPEIQDEPWKP 140


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +3

Query: 39  RRNAQRNAPPKRYFGLKRKRNVRS--EKNARGSTRRNLQRFENGN 167
           +R+   +  P +Y G  R+RN R     N  G  RRN  R  + N
Sbjct: 178 KRSRPHSPTPGKYMGYDRRRNSRDFPSNNKDGGYRRNNYRDRDSN 222


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 308 EKDKEESAWRTKGEYKD 358
           EKDKE S+W+   EY D
Sbjct: 746 EKDKEISSWKKASEYMD 762


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +3

Query: 6   RLKRDDKSGWQRRNAQRNAPPKRYFGLKRKRN 101
           +L +     WQ  N   N  P+ Y G++   N
Sbjct: 450 QLPKPPVQAWQNENLSSNNKPQEYVGVENDYN 481


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 45   NAQRNAPPKRYFGLKRKRNVR 107
            N+Q NAPP R   + R R  R
Sbjct: 1139 NSQTNAPPGRKIAVPRSRRKR 1159


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +3

Query: 51  QRNAPPKRYFGLKRKRNVRSEKNARGSTRRNLQRFENGN 167
           Q+N PP      +R   V +   AR S++R +   +  N
Sbjct: 63  QKNVPPSSRSPRRRVAGVTNNVTARISSKRKINMVDEAN 101


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 45  NAQRNAPPKRYFGLKRKRNVRSEKNARGSTRRNLQRFENGNLKKRRNIKR 194
           N  R++   +     RK +  SEK  +G  R+N Q   +   +K +N KR
Sbjct: 35  NIPRSSAKTKEHSADRKPHRNSEKKTQGMPRKNQQLASSE--RKTKNKKR 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,024,324
Number of Sequences: 5004
Number of extensions: 15030
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)