Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K12
         (390 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15667-1|AAA51021.1|  562|Caenorhabditis elegans CeSema protein.       33   0.071
AL032653-1|CAA21714.1|  712|Caenorhabditis elegans Hypothetical ...    32   0.12 
Z73910-4|CAA98136.1|  662|Caenorhabditis elegans Hypothetical pr...    31   0.29 
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr...    30   0.50 
Z96102-2|CAI79216.1|  746|Caenorhabditis elegans Hypothetical pr...    29   0.88 
Z93389-5|CAI79177.1|  212|Caenorhabditis elegans Hypothetical pr...    27   3.6  
AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical ...    27   3.6  
U40938-4|AAK68283.1|  447|Caenorhabditis elegans Cyclophilin fam...    27   4.7  
AL032658-2|CAA21744.1|  687|Caenorhabditis elegans Hypothetical ...    27   4.7  
U97007-6|AAB52296.3|  468|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U58728-2|AAB00589.2|  240|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF043692-2|AAB97531.1|  253|Caenorhabditis elegans Hypothetical ...    27   6.2  
U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical pr...    26   8.2  

>U15667-1|AAA51021.1|  562|Caenorhabditis elegans CeSema protein.
          Length = 562

 Score = 33.1 bits (72), Expect = 0.071
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 99  NVRSEKNARGSTRRNLQRFENGNLKKRRNIKRCWRAWRRRPVLRKPMSSGCS 254
           +VR     + S ++  + F+NG  K++ N +  W A+ R  V  KP    CS
Sbjct: 329 DVRMSAVCKFSMKKIREEFDNGTFKQQNNAQSMWMAFNRNEV-PKPRPGSCS 379


>AL032653-1|CAA21714.1|  712|Caenorhabditis elegans Hypothetical
           protein Y54E5B.1a protein.
          Length = 712

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 99  NVRSEKNARGSTRRNLQRFENGNLKKRRNIKRCWRAWRRRPVLRKPMSSGCS 254
           +VR     + S ++  + F+NG  K + N +  W A+ R  V  KP    CS
Sbjct: 326 DVRMSAVCKFSMKKIREEFDNGTFKHQNNAQSMWMAFNRNEV-PKPRPGSCS 376


>Z73910-4|CAA98136.1|  662|Caenorhabditis elegans Hypothetical
           protein M117.4 protein.
          Length = 662

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
 Frame = +3

Query: 15  RDDKSGWQRRNAQRNAPPKRYFGL--KRKRNVRSEKN----ARGSTR-RNLQRFENGNLK 173
           RD KSG   R+  RN   K+      + K++   +K      +GST   +     NG ++
Sbjct: 207 RDKKSG---RSTDRNIHKKKDVAALDENKKSPEDKKKDAGTKKGSTEDASTDNLNNGKVQ 263

Query: 174 KRRNIKRCWRAWRRRPVLRKPMSSGCSKNRRQHQXXXXXXXXXXXXKTKRNPPGEPKGNT 353
            RR  KR  ++  ++PV R P S         H             ++ + PP EPK   
Sbjct: 264 SRRKSKRQKKSIFQQPVQRTPGS---------HPSAYLQPTRARTERSLKLPPAEPKSVD 314

Query: 354 RTPKR 368
             P++
Sbjct: 315 ERPRK 319


>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical
           protein K08E7.5a protein.
          Length = 1221

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 272 SAKSWRRGGAPGEKDKEESAWRTKGEYKDPEKTSEP 379
           S  S  RG APG + K E+ + ++  Y D   T +P
Sbjct: 303 SRSSTSRGKAPGTEPKSEARYSSQNPYSDNSSTQKP 338


>Z96102-2|CAI79216.1|  746|Caenorhabditis elegans Hypothetical
           protein H39E23.3 protein.
          Length = 746

 Score = 29.5 bits (63), Expect = 0.88
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +3

Query: 12  KRDDKSGWQRRNAQRNAPPKRYFGLKRKRNVRSEKNARGSTRRNLQRFENGNLKKRRNIK 191
           +  DK   +  ++++NAP KR     +  +  SEK A      +  + E+ + +K+   K
Sbjct: 69  RESDKPKTESADSEKNAPAKREADKPKTESADSEKKAPAKREADKPKTESADSEKKAPAK 128

Query: 192 R 194
           R
Sbjct: 129 R 129



 Score = 29.5 bits (63), Expect = 0.88
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +3

Query: 12  KRDDKSGWQRRNAQRNAPPKRYFGLKRKRNVRSEKNARGSTRRNLQRFENGNLKKRRNIK 191
           +  DK   +  ++++NAP KR     +  +  SEK A      +  + E+ + +K+   K
Sbjct: 149 RESDKPKTESADSEKNAPAKREADKPKTESADSEKKAPAKREADKPKTESADSEKKAPAK 208

Query: 192 R 194
           R
Sbjct: 209 R 209



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 12  KRD-DKSGWQRRNAQRNAPPKRYFGLKRKRNVRSEKNARGSTRRNLQRFENGNLKKRRNI 188
           KR+ DK   +  ++++ AP KR     +  +  SEK A      +  + E+ + +K+  +
Sbjct: 188 KREADKPKTESADSEKKAPAKREADKPKTESADSEKKAPAKRESDKPKTESADSEKKAPV 247

Query: 189 KR 194
           KR
Sbjct: 248 KR 249



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +3

Query: 12  KRDDKSGWQRRNAQRNAPPKRYFGLKRKRNVRSEKNARGSTRRNLQRFENGNLKKRRNIK 191
           +  DK   +  ++++ AP KR     +  +  SEK A      +  + E+ + +K+  +K
Sbjct: 229 RESDKPKTESADSEKKAPVKREADKPKTESADSEKKAPAKRESDKPKTESADSEKKAPVK 288

Query: 192 R 194
           R
Sbjct: 289 R 289



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +3

Query: 12  KRDDKSGWQRRNAQRNAPPKRYFGLKRKRNVRSEKNARGSTRRNLQRFENGNLKKRRNIK 191
           +  DK   +  ++++ AP KR     +  +  SEK A      +  + E+ + +K+  +K
Sbjct: 269 RESDKPKTESADSEKKAPVKREADKPKTESADSEKKAPAKRESDKPKTESADSEKKAPVK 328

Query: 192 R 194
           R
Sbjct: 329 R 329



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 12  KRD-DKSGWQRRNAQRNAPPKRYFGLKRKRNVRSEKNARGSTRRNLQRFENGNLKKRRNI 188
           KR+ D    +  ++++NAP KR     +  +  SEK A      +  + E+ + +K+  +
Sbjct: 668 KREADPPKTESADSEKNAPAKREADKPKTESADSEKKASAKREADPPKTESADSEKKAPV 727

Query: 189 KR 194
           KR
Sbjct: 728 KR 729



 Score = 26.2 bits (55), Expect = 8.2
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 12  KRD-DKSGWQRRNAQRNAPPKRYFGLKRKRNVRSEKNARGSTRRNLQRFENGNLKKRRNI 188
           KR+ D    +  ++++ AP KR     +  +  SEK A      +  + E+ + +K+  +
Sbjct: 348 KREADPPKTESADSEKKAPAKREADKPKTESADSEKKASAKREADKPKTESADSEKKAPV 407

Query: 189 KR 194
           KR
Sbjct: 408 KR 409



 Score = 26.2 bits (55), Expect = 8.2
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 12  KRD-DKSGWQRRNAQRNAPPKRYFGLKRKRNVRSEKNARGSTRRNLQRFENGNLKKRRNI 188
           KR+ D    +  ++++NAP KR     +  +  SEK A      +  + E+ + +K+   
Sbjct: 548 KREADPPKTESADSEKNAPAKREADKPKTESADSEKKAPAKREADPPKTESADSEKKAPA 607

Query: 189 KR 194
           KR
Sbjct: 608 KR 609


>Z93389-5|CAI79177.1|  212|Caenorhabditis elegans Hypothetical
           protein T13F3.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 299 APGEKDKEESAWRTKGEYKDPEKTSEP 379
           AP EK KEE   +   E K+ EK  EP
Sbjct: 64  APEEKKKEEKVEKKPEENKEAEKKDEP 90


>AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical
           protein Y106G6D.3 protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +3

Query: 108 SEKNARGSTRRNLQRFENGNLKKRRNIKRCWRAWRRRPVLRKPMSSGCSKNRRQ 269
           + +N+R S+R N  + +     KRR+ +R   + RR+  LRK  S    +++R+
Sbjct: 39  NSRNSRKSSRSN--KSKRSQRSKRRSAQRKKSSSRRKKKLRKEKSRKSQRSKRK 90


>U40938-4|AAK68283.1|  447|Caenorhabditis elegans Cyclophilin family
           protein 8, isoformb protein.
          Length = 447

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 10/135 (7%)
 Frame = +3

Query: 6   RLKRDDKSGW-QRRNAQRNAPPKRYFGLK-RKRNVRSEKNARGSTRRNLQRFENGNL--- 170
           R +RDD+SG  +RR+ +R+AP K    ++ R +        R +T  + +R E+  L   
Sbjct: 275 RNERDDRSGRDERRDDRRSAPTKDGIKVRGRGKLTFLGGRTRSTTPPHWKREESKKLTLE 334

Query: 171 ---KKRRNIKRCWRAWRRRPVLRKPMSSGCSKNR--RQHQXXXXXXXXXXXXKTKRNPPG 335
              K++  ++   +   +R       ++   K R  RQ+Q            + KR    
Sbjct: 335 AHQKRQEELEERQKRAAQREKEEAERNARLEKERVERQNQRELERQKQEAERELKRQQEN 394

Query: 336 EPKGNTRTPKRHQSR 380
           E  GN R  +R  SR
Sbjct: 395 EESGNRR--RRRSSR 407


>AL032658-2|CAA21744.1|  687|Caenorhabditis elegans Hypothetical
           protein Y76A2B.3 protein.
          Length = 687

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +2

Query: 338 TKGEYKDPEKTSE 376
           TKG YKDPE+T+E
Sbjct: 503 TKGYYKDPERTAE 515


>U97007-6|AAB52296.3|  468|Caenorhabditis elegans Hypothetical
           protein ZC196.4 protein.
          Length = 468

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = +3

Query: 3   TRLKRDDKSGWQRRNAQRNAPPKRYFGLKRKRNVRSEKNARGSTRRNLQRFENGNLKKRR 182
           + LK  D S  ++   ++N         + K N +  K AR    +  +  +    K R+
Sbjct: 195 SELKEQDDS--EKECEEQNGEFLEKLENQNKVNSKLLKEARRKREKRRRELQEDLEKMRQ 252

Query: 183 NIKRCWRAW 209
           N K+C+ AW
Sbjct: 253 NQKQCFEAW 261


>U58728-2|AAB00589.2|  240|Caenorhabditis elegans Hypothetical
           protein C54H2.4 protein.
          Length = 240

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 242 QRMLEEQKAASAKSWRRGGAPGEKDKEESAWRTKGEYKDPEKTSE 376
           QR  +EQ+   +KS  R       D  ES W +KGE K  ++  E
Sbjct: 86  QRGQQEQQKQRSKSMPRKIESNPFDGIESGWWSKGEVKRNQERRE 130


>AF043692-2|AAB97531.1|  253|Caenorhabditis elegans Hypothetical
           protein C17F3.3 protein.
          Length = 253

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +2

Query: 302 PGEKD--KEESAWRTKGEYKDPEKTSEP 379
           PGEK+  KEE    TK E K  EK  EP
Sbjct: 160 PGEKEEKKEEVKKETKKEEKKEEKKEEP 187


>U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical
           protein C34F11.5 protein.
          Length = 894

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 84  LKRKRNVRSEKNARGSTRRNLQRFENGNLKKRRNIKRCWRAWRRRPVLRKPMSSGC--SK 257
           LKRK  V + K  + ST +  ++      +KR   KR  R +  R  L+K +      +K
Sbjct: 679 LKRKEIVLTLKVRKASTAKKTKKAMQEKKRKRLRAKRRLRRFIMRKRLKKKLRKRYRGAK 738

Query: 258 NRRQHQ 275
            RR+ Q
Sbjct: 739 RRRKRQ 744


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,047,456
Number of Sequences: 27780
Number of extensions: 95292
Number of successful extensions: 415
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)