Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K11
         (261 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   1.3  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   2.2  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    23   6.7  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    23   8.8  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 112 YYWLIFVNNNTT 147
           Y WLIF N NTT
Sbjct: 646 YIWLIFTNENTT 657


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 41  HALIFVRPILKSIYLLTIRFSYKCIIG*SL*IITQHNISYACY 169
           H+ +FV    KS++L+T +  +KC+   +  +   HNI  A +
Sbjct: 33  HSFMFV----KSLHLMTSQHIFKCLSSCNYALSILHNICLASF 71


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 141 HNIT*ATPVIPEGLGSGEIANYTNHISPS 227
           H  + + P  P  + S  +A+YT   SPS
Sbjct: 69  HRFSYSPPQHPASINSRRVASYTVQSSPS 97


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 199 AISPLPNPSGITGVAYVMLCYYLQRLTNN 113
           ++ PLPN    TG+ +  L   +Q  T+N
Sbjct: 234 SLRPLPNRHVDTGMGFERLVSVIQNKTSN 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,041,471
Number of Sequences: 5004
Number of extensions: 17549
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)