Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K11
         (261 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024090-4|AAK67221.1|  300|Caenorhabditis elegans Hypothetical ...    26   3.2  
AL023816-3|CAA19432.1|  296|Caenorhabditis elegans Hypothetical ...    25   5.6  
AC024791-12|AAT81181.1|  401|Caenorhabditis elegans Hypothetical...    25   5.6  
AC024791-11|AAF60659.1|  410|Caenorhabditis elegans Hypothetical...    25   5.6  
Z83107-8|CAB05504.1|  348|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z81478-2|CAB03933.1|  195|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>AC024090-4|AAK67221.1|  300|Caenorhabditis elegans Hypothetical
           protein C52E2.7 protein.
          Length = 300

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 41  HALIFVRPILKSIYLLTIRFSYKC 112
           + ++FV PI +  YL T  FS+ C
Sbjct: 274 NVIVFVDPIRRWFYLTTYSFSHHC 297


>AL023816-3|CAA19432.1|  296|Caenorhabditis elegans Hypothetical
           protein T05G11.4 protein.
          Length = 296

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 178 PSGITGVAYVMLCYYLQRLTNNTLITKSYS 89
           PS I  +A V+L +YL++    ++ TKS S
Sbjct: 160 PSIILPIATVVLIFYLRKTKKTSVSTKSLS 189


>AC024791-12|AAT81181.1|  401|Caenorhabditis elegans Hypothetical
           protein Y47G6A.7b protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 65  ILKSIYLLTIRFSYKCI 115
           +LK ++ +TIRF Y+C+
Sbjct: 117 VLKYLFAITIRFIYECL 133


>AC024791-11|AAF60659.1|  410|Caenorhabditis elegans Hypothetical
           protein Y47G6A.7a protein.
          Length = 410

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 65  ILKSIYLLTIRFSYKCI 115
           +LK ++ +TIRF Y+C+
Sbjct: 117 VLKYLFAITIRFIYECL 133


>Z83107-8|CAB05504.1|  348|Caenorhabditis elegans Hypothetical
           protein F32A7.7 protein.
          Length = 348

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 187 LPNPSGITGVAYVMLCYYLQRLTNNTL 107
           LPN   I  VAYV   +Y+   T+N L
Sbjct: 167 LPNGLSIEQVAYVGFIFYISDETSNNL 193


>Z81478-2|CAB03933.1|  195|Caenorhabditis elegans Hypothetical
          protein C31G12.2 protein.
          Length = 195

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 19 IMILIIIPRVNFCTPNFKIHLFTNYT 96
          ++ LI+IP VN C P  ++   T+ T
Sbjct: 1  MLFLILIPVVNSCIPTQQVETTTSTT 26


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,651,984
Number of Sequences: 27780
Number of extensions: 93802
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)