Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K10
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    27   1.1  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    25   5.7  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   5.7  
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        24   7.6  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    24   7.6  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   7.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    24   10.0 
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    24   10.0 
SPCC14G10.03c |ump1||proteasome maturation factor Ump1 |Schizosa...    24   10.0 
SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   10.0 

>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 313 FQLVDCSILILFIVCCRCVWSYVRDFHISCDVL 215
           FQ+++  ILI+  +C R  W +   +  + ++L
Sbjct: 198 FQMINGFILIVTFICVRIAWGWFSAYSTAIEIL 230


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 272 NNKEYKNGTINKLKKWNR 325
           NNKEY + T   +K WNR
Sbjct: 52  NNKEYTSLTSTLVKIWNR 69


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = -1

Query: 252 VTSETFIYLVTFFAYWNY*TSTNSIKL-NKHFHI-LNN 145
           VT+ + I+++   AYW Y ++ NS  L  K++HI LNN
Sbjct: 334 VTNFSRIWVMHISAYWYY-SAYNSPNLYTKNYHIRLNN 370


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 129 FVICY---CYSKCENVY*VLYC*LMSSSSNTQ 215
           F++CY   C     +V   LYC LMS++S TQ
Sbjct: 27  FLVCYPLYCVVCFVSVLCRLYCILMSAASATQ 58


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 279 LLFVADVFGVTSETFIYLVTFF 214
           L+F A VF V   TF Y+ +FF
Sbjct: 139 LMFAAYVFSVVLCTFCYVQSFF 160


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -1

Query: 219 FFAYWNY*TSTNSIKLNKHFHILNNSNKLQTHRYCNHNTVG*EQLS*FT--LEPS 61
           FF+  N   STNS   +  F  + + + L  +R  NH  +  +QLS F   L+PS
Sbjct: 255 FFSQNNVSLSTNSKNYSTDFTKIQSDSSLLQNRQQNHR-IETDQLSHFPDHLDPS 308


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 49   PFSIRGF*CKLAKLFLSDCIVVAVPM 126
            P ++  F CK   LF S C    VPM
Sbjct: 1931 PLTVYQFICKAPDLFFSCCSHFIVPM 1956


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = -1

Query: 309 SLLIVPFLYSLLF-----VADVFGVTSETFIYLVTFFAY 208
           S+  V FL S  F     + D +  T ET+IYL    AY
Sbjct: 281 SIYSVQFLNSTFFSNYSIITDAYFQTRETYIYLPAELAY 319


>SPCC14G10.03c |ump1||proteasome maturation factor Ump1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 129

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 212 AKNVTRYMKVSDVTPNTSATNNKEYKNGTINKLKKW 319
           A  V+   KVS + P+  A +  E K+   ++LK W
Sbjct: 10  AAEVSGNFKVSVLEPSIPAVHRVENKHPLESRLKNW 45


>SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 126

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 217 ERHKIYESL*RNSKHICNK 273
           E +K+YE++  + KH+C K
Sbjct: 93  EANKLYENVLASYKHLCEK 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,414,628
Number of Sequences: 5004
Number of extensions: 25086
Number of successful extensions: 66
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)