Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K10
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0007 - 47999-48379,48496-48711,48794-48918,49031-49220,494...    30   0.77 
03_05_0472 - 24655384-24655764,24655904-24656119,24656197-246563...    30   0.77 
02_01_0008 - 50576-50671,50767-50829,50918-50961,51048-51129,522...    28   2.4  
04_04_0881 + 29055724-29059197                                         27   4.1  
11_04_0212 - 14919074-14919433,14919444-14920514                       27   5.5  
09_04_0188 - 15410310-15410514,15410597-15410748,15410845-154110...    26   9.5  

>07_01_0007 -
           47999-48379,48496-48711,48794-48918,49031-49220,
           49465-49559,49807-49954
          Length = 384

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 234 IYLVTFFAYWNY*TSTNSIKLN 169
           +Y VTF  YW Y +ST+S  LN
Sbjct: 212 LYAVTFMGYWAYGSSTSSYLLN 233


>03_05_0472 -
           24655384-24655764,24655904-24656119,24656197-24656321,
           24656432-24656621,24656817-24656911,24657230-24657454,
           24657940-24658003
          Length = 431

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 234 IYLVTFFAYWNY*TSTNSIKLN 169
           +Y VTF  YW Y +ST+S  LN
Sbjct: 259 LYAVTFMGYWAYGSSTSSYLLN 280


>02_01_0008 -
           50576-50671,50767-50829,50918-50961,51048-51129,
           52205-52371,52502-52654,52780-52960,53452-53540,
           53599-53799,54804-55147,55397-55626
          Length = 549

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 310 QLVDCSILILFIVCCRCVWSY 248
           Q+  CS +I+  VCC CV +Y
Sbjct: 518 QIAACSFIIVVGVCCACVGTY 538


>04_04_0881 + 29055724-29059197
          Length = 1157

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 316 LFQLVDCSILILFIVCCRCVWSYVR 242
           L  +V  ++L+L + CC CV+S +R
Sbjct: 768 LIGVVAATVLLLVLFCCCCVYSLLR 792


>11_04_0212 - 14919074-14919433,14919444-14920514
          Length = 476

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 331 ISTIPLFQLVDCSILILFIVCCRCVWSYVRDFHISCDVLCV 209
           ++T+P +Q  D S +        CV+  V   H +CD L +
Sbjct: 197 LATVPAYQAADFSYVFESFHGMPCVYDRVAACHNACDALVI 237


>09_04_0188 -
           15410310-15410514,15410597-15410748,15410845-15411003,
           15411062-15411367,15412508-15412535,15413174-15413290,
           15413649-15413717,15413919-15414103
          Length = 406

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 285 YSLLFVADVFGVTSETFIY 229
           +SL+FVA +FG T   ++Y
Sbjct: 75  FSLIFVASLFGATVNQYVY 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,498,094
Number of Sequences: 37544
Number of extensions: 136864
Number of successful extensions: 381
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)