Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K09
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.03 |||conserved fungal protein|Schizosaccharomyces pombe...    26   2.2  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    25   3.9  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    24   9.0  

>SPBC216.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 168 NFSVHLVIQFSDGEIPSSQTIS 103
           N S+HLV+  +DG +P  + I+
Sbjct: 212 NQSIHLVVDMTDGNVPIYKAIA 233


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -2

Query: 258 FTSETLVPDCFSMQSMPYYFYT*VNIIK*WNFSVHLVIQFSDGEIPSSQTISMLGHLV 85
           + +ET++P   +M+S P Y Y    I     F++  +    + E+   Q +  L  LV
Sbjct: 475 WATETIIPKFLAMRSHPNYLYRMTTI-----FAISEIAPALNAEVIEKQILPTLEQLV 527


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 127 DTFIPNYINARP 92
           DTFIP Y+NA P
Sbjct: 744 DTFIPCYVNAFP 755


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,703,488
Number of Sequences: 5004
Number of extensions: 33998
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)