Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K09
         (376 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1057 + 25733376-25735439                                         33   0.073
04_01_0400 + 5257505-5257655,5258588-5258772                           27   4.8  
09_02_0311 + 7164774-7166327                                           27   6.3  
04_03_0926 - 20861383-20862198,20862359-20862430,20862938-208631...    27   6.3  

>12_02_1057 + 25733376-25735439
          Length = 687

 Score = 33.1 bits (72), Expect = 0.073
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -2

Query: 96 GHLVCRHVSIGSVVAARIGHSSNAALPVRSSC 1
          GHLV   V IGS+  A +G  +N  LP   SC
Sbjct: 4  GHLVAVAVVIGSLCVAAVGQGNNIVLPFAPSC 35


>04_01_0400 + 5257505-5257655,5258588-5258772
          Length = 111

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 2   HEDRTGRAALLECPMRAATTDPMLTCLQTKWPSI 103
           HE +   AA+  CP+RAA +  +    +  W ++
Sbjct: 29  HEQQATGAAVASCPLRAANSGVVTRFAKQSWKAV 62


>09_02_0311 + 7164774-7166327
          Length = 517

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 90  LVCRHVSIGSVVAARIGHSSNAALP 16
           +V    ++G+++ AR+G S  AA+P
Sbjct: 359 MVASQAAVGALIGARLGWSGTAAIP 383


>04_03_0926 -
           20861383-20862198,20862359-20862430,20862938-20863123,
           20863214-20863304,20863698-20863852,20864501-20864579,
           20866797-20867263
          Length = 621

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 41  PMRAATTDPMLTCLQTKWPSIDIVWDEGISPSL 139
           P++ +   P++ C++T+WP     W  G  PS+
Sbjct: 589 PVQTSQHAPLVDCIRTRWPRAVCSW-VGDMPSI 620


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,438,836
Number of Sequences: 37544
Number of extensions: 198471
Number of successful extensions: 345
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)