Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K09
         (376 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   0.89 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   4.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   6.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   6.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   6.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   8.3  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 0.89
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 333 IPNLISL*GIRKTFLIVPNLCKIAAFTSE 247
           +PN +SL   +  +++  +LCKI A+ SE
Sbjct: 94  LPNELSLFWQQYPWVLGVSLCKIRAYVSE 122


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -2

Query: 261 AFTSETLVPDCFSMQSMP-YYFYT 193
           A+    LV DC  + S P Y+ YT
Sbjct: 60  AYVRFKLVTDCIFVTSEPGYFLYT 83


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 258 FTSETLVPDCFSMQSMPYYFYT*VNII 178
           +++    P      S+PYY Y  +N+I
Sbjct: 303 YSNGVTFPQRNRFSSLPYYKYKYLNVI 329


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 258 FTSETLVPDCFSMQSMPYYFYT*VNII 178
           +++    P      S+PYY Y  +N+I
Sbjct: 303 YSNGVTFPQRNRFSSLPYYKYKYLNVI 329


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -2

Query: 204 YFYT*V-NIIK*WNFSVHLVIQF 139
           Y YT   N+ K   F VH+++QF
Sbjct: 46  YIYTIKSNMAKTLQFDVHMMLQF 68


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 302 LIPHSDIKFGIVKYCEG 352
           + P+ +  +  VKYC+G
Sbjct: 103 IAPYPNWSYNDVKYCDG 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,856
Number of Sequences: 438
Number of extensions: 2110
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)