Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_K08
(264 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 31 0.002
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 30 0.046
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 0.99
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 26 0.99
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 2.3
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 24 3.0
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 24 4.0
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 24 4.0
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 23 5.3
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po... 23 5.3
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 23 5.3
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 23 5.3
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 23 5.3
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 23 5.3
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 23 7.0
SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch... 23 7.0
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 23 7.0
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 23 7.0
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 23 7.0
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 23 7.0
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 23 9.2
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 23 9.2
SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|c... 23 9.2
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 23 9.2
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 23 9.2
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 23 9.2
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 31.5 bits (68), Expect(2) = 0.002
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +1
Query: 211 LLFSSTSWTPDEDFSIL 261
LL +STSWTPDED IL
Sbjct: 246 LLITSTSWTPDEDIYIL 262
Score = 22.6 bits (46), Expect(2) = 0.002
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 22 YDRPPKIFHSLTLEEKHAWFL-KIGNQYPEFSSK 120
YDRPP F + E+K + KI +Y S+K
Sbjct: 212 YDRPPNHFTPIKNEQKKQMSIKKIPCEYNPSSTK 245
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 30.3 bits (65), Expect = 0.046
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 58 LEEKHAWFLKIGNQYPEFSSKYFEEQNDPVEKTAFTQLVNGQV-QSRINRPGLLFSSTSW 234
+E + +K G P + + N+P +A ++ +NG V S + GLL S+ S
Sbjct: 41 VESAYDNLVKNGMIAPRRKNSFASSVNNPFSTSALSEALNGSVSMSHVPSSGLLKSTLSS 100
Query: 235 TPDEDFSIL 261
TP ++L
Sbjct: 101 TPTAGSNLL 109
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 25.8 bits (54), Expect = 0.99
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +3
Query: 27 PSAKNIPFPNFRRKTCLVS*DWKPVSG 107
P+A N+P P F +W+P +G
Sbjct: 167 PAASNLPIPTFLHSPVSEKAEWQPPTG 193
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 0.99
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -2
Query: 263 ISMLKSSSGVQLVLLNNKPGLLILDCTWPFTSCVNAVF 150
IS L S V +LL G L TW F CV+ F
Sbjct: 29 ISALPESENVHCLLLKQLIGSPQLKQTWQFNFCVDLNF 66
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 24.6 bits (51), Expect = 2.3
Identities = 9/44 (20%), Positives = 20/44 (45%)
Frame = +1
Query: 73 AWFLKIGNQYPEFSSKYFEEQNDPVEKTAFTQLVNGQVQSRINR 204
+W+ + +Q ++ ++ N P + + + VN S NR
Sbjct: 454 SWYSTVRSQLDSYNCQFVVNSNQPKDSIMWKRKVNNVFNSSTNR 497
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 24.2 bits (50), Expect = 3.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 155 QHLHSW*MAKCSLELIGLVC 214
QHLHS + LE+I L+C
Sbjct: 4 QHLHSCKFYRLPLEIIPLIC 23
Score = 23.0 bits (47), Expect = 7.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 263 ISMLKSSSGVQLVLLNNKPGLLILDCTWPFTSCVNAVFSTGS 138
IS LKS + +LL+ G+L D W F + + + ST +
Sbjct: 177 ISSLKSRTTTSNLLLSLFVGILFEDDLWYFFNTLYMLSSTSA 218
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 23.8 bits (49), Expect = 4.0
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -2
Query: 254 LKSSSGVQLVLLNNKPGLLILDCTWPFTSCVNAVFSTGSFCSSKYLL 114
+KSS+ V+L K ++L+CT P + N F+ S + +++
Sbjct: 665 IKSSNTVKLSSQQLKKESVLLNCTIPEFNVSNTYFTFSSPSTDNFVI 711
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 23.8 bits (49), Expect = 4.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 12 NHTL*PSAKNIPFPNFRRKT 71
N +L PS+ N+P ++RR T
Sbjct: 380 NGSLSPSSTNVPLQSYRRTT 399
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 23.4 bits (48), Expect = 5.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 185 CSLELIGLVCYSAVLVGHLM 244
CSLE+ +VCYS++ V L+
Sbjct: 764 CSLEVGPIVCYSSLKVLFLL 783
>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 23.4 bits (48), Expect = 5.3
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 251 KSSSGVQLVLLNNKPGLLILDCTWPFTSCVNAVFSTGSFCSSKYL 117
+S VQ+ N K + C++ +TS + A TG + S +L
Sbjct: 22 ESFCAVQIAGTNGKGSI----CSYIYTSLLQAAIKTGRYTSPHFL 62
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 23.4 bits (48), Expect = 5.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 193 RINRPGLLFSSTSWTPDEDFSILM 264
R+N GLL S +WT +D + +
Sbjct: 1260 RVNEKGLLVCSGNWTAFKDVRLTL 1283
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 23.4 bits (48), Expect = 5.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 193 RINRPGLLFSSTSWTPDEDFSILM 264
R+N GLL S +WT +D + +
Sbjct: 1260 RVNEKGLLVCSGNWTAFKDVRLTL 1283
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 23.4 bits (48), Expect = 5.3
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 34 PKIFHSLTLEEKHAWFLKIGNQYPEFSSKYFEEQNDPVE 150
P + L+ EE+ + + G PE S FE+ +D E
Sbjct: 56 PSLTAELSEEEEGEYSSESGRSTPELSPDDFEDADDEEE 94
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 23.4 bits (48), Expect = 5.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 62 KKNMLGFLRLETSIRNSQVNILKSKMIQ*RRQHL 163
K+N GF L+ S N+ + K+ + RRQ L
Sbjct: 785 KRNRNGFAALDDSDDEDYSNLRREKLKELRRQKL 818
>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 104
Score = 23.0 bits (47), Expect = 7.0
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = -2
Query: 134 CSSKYLLENSGYWFPI 87
CS Y++ N ++FP+
Sbjct: 13 CSRYYIISNMAFYFPV 28
>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 333
Score = 23.0 bits (47), Expect = 7.0
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 95 FPILRNQACFSSKVREWNI 39
FP LRN F+ KV E NI
Sbjct: 227 FPFLRNMDKFNPKVFEKNI 245
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 23.0 bits (47), Expect = 7.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 164 HSW*MAKCSLELIGLVCYSA 223
++W K S+E++GL+ Y A
Sbjct: 1493 YNWRSKKASVEILGLMSYMA 1512
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 23.0 bits (47), Expect = 7.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 254 LKSSSGVQLVLLNNKPGLLIL 192
+KSS+ V VLLN+ GLL L
Sbjct: 458 MKSSAKVASVLLNSWSGLLAL 478
>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 273
Score = 23.0 bits (47), Expect = 7.0
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 28 RPPKIFHSLT-LEEKHAWFLKIGNQYPEFSSKYFEEQNDPVEKTAFT 165
RP +++T +EE H W + + +P F EE+ + + T T
Sbjct: 199 RPHGTLYTITDVEELHVWMAQHLDAHPLFRRFTKEEEENDICVTLMT 245
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 23.0 bits (47), Expect = 7.0
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 7 GATTLYDRPPKIFHSLTLEEKHAWFLKIGNQYPEFSSKYFEEQ--NDPVEKTAFTQLV 174
G ++ + PPK+ + E + A + + E K EE+ + +KT+ L+
Sbjct: 368 GGRSVSEEPPKLIIDIQRERQKAAYAEFKKYIDENGPKMLEEEKAREAEQKTSIFNLL 425
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 22.6 bits (46), Expect = 9.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 212 KPGLLILDCTWPFTSCVNAVFSTGSFCSSKYLLENS 105
K L L TWP TSC++ + S L+ NS
Sbjct: 324 KFALATLPQTWPNTSCLDLLNYCQEGKSHMILISNS 359
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 22.6 bits (46), Expect = 9.2
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = -2
Query: 146 TGSFCSSKYLLENSGYWFPILRNQACF 66
T S C ++ NSG W + CF
Sbjct: 182 TASICLQFWININSGIWITVFIALLCF 208
>SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 326
Score = 22.6 bits (46), Expect = 9.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 112 SSKYFEEQNDPVEKTAFTQLV 174
SSK EEQ + KT F LV
Sbjct: 145 SSKTTEEQKEEARKTNFVPLV 165
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 22.6 bits (46), Expect = 9.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 76 KHVFLLKLGNGIFLAD 29
KH +LL LG + LAD
Sbjct: 387 KHAYLLDLGLAVHLAD 402
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 22.6 bits (46), Expect = 9.2
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 82 LKIGNQYPEFSSKYFEEQNDPVEKTAFTQLVNGQVQSRINRPGLLFSSTSW 234
LK N+YPE + K+F + D + AFT + ++ + + P L +W
Sbjct: 1506 LKYVNRYPEDAWKFFMVRYD---EAAFTSVFVELLRLKDSDPLLSVVKDNW 1553
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 22.6 bits (46), Expect = 9.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 236 VQLVLLNNKPGLLILDCTWPFTSCVNAVFSTGS 138
V V+ N +LIL T+ T ++AVFS G+
Sbjct: 404 VNAVICNCIISILILFLTFAGTVTLDAVFSVGA 436
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,166,415
Number of Sequences: 5004
Number of extensions: 21777
Number of successful extensions: 83
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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