Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K07
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   100   2e-22
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...   100   2e-22
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    27   1.2  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    27   1.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   2.1  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   4.8  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   4.8  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   6.4  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    24   8.5  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 99.5 bits (237), Expect = 2e-22
 Identities = 48/71 (67%), Positives = 59/71 (83%)
 Frame = +3

Query: 210 DYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHA 389
           DYI++     + LPH+AGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIV+HA
Sbjct: 38  DYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHA 95

Query: 390 FDIIHLLTGEN 422
           F+II LLT +N
Sbjct: 96  FEIIALLTDQN 106


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 99.5 bits (237), Expect = 2e-22
 Identities = 48/71 (67%), Positives = 59/71 (83%)
 Frame = +3

Query: 210 DYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHA 389
           DYI++     + LPH+AGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIV+HA
Sbjct: 38  DYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHA 95

Query: 390 FDIIHLLTGEN 422
           F+II LLT +N
Sbjct: 96  FEIIALLTDQN 106


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 306 VERLTNSLMMHGRNNGKKLMAVRIVRHAFDIIHLLTGEN 422
           V+ L N +M     +GKK  A +IV  A  II   TGEN
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGEN 160


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 205 QRHVRYLNVITTPSPKKFDFGNISRLW 125
           Q+H++YL  +  P P  F   + SR W
Sbjct: 32  QKHLKYLTKMLDPLPSPFTVLDASRAW 58


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 25/113 (22%), Positives = 44/113 (38%)
 Frame = +3

Query: 66   RTGPKKSPTRAAWLWTTCHYHSRLIFPKSNFLGDGVVMTFKYRTCLCQDYISVKEKYAKY 245
            +T  KK+  R   LW       +      N+L DG  +T      +   ++   E   ++
Sbjct: 792  KTVAKKNLGRLTRLWLKAEQERQ-----HNYLKDGPYVTADEAVAIYTTFVHWLES-RRF 845

Query: 246  LPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHAFDIIH 404
             P      ++K   K     +ERL  +  + GR N  +   + +V  A+D  H
Sbjct: 846  QPIPFPPLSYKHDTKLLVLALERLKEAYSVKGRLNQSQREELALVEQAYDNPH 898


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 264 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHAFDIIH 404
           +Y  KR   A+  +V R       H R N  KL +  +  H F ++H
Sbjct: 390 KYPRKRQEIAE--LVIRCLQDRSSHVRRNAIKLFSKLLTTHPFSVMH 434


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 78  KKSPTRAAWLWTTCHYHSRLIF 143
           K +P R   LW +CH++  +I+
Sbjct: 256 KVAPGRYECLWLSCHFYYSIIY 277


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 294 QCPIVERLTNSLMMHGRNNGKKLMAVRIVRHAFDII 401
           +CP  E     +++   +NGKK+  V       DI+
Sbjct: 32  RCPKTEEQLREILVDANSNGKKIRVVGAGHSPSDIV 67


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 66  SSAIFHTFIRNLRIITSRCP 7
           SSA  +  +RN++II  +CP
Sbjct: 295 SSATQYVILRNIQIILEQCP 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,769,119
Number of Sequences: 5004
Number of extensions: 36033
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)