Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_K07
(422 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 121 2e-28
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 121 3e-28
03_01_0548 + 4099386-4099847,4100435-4101316 28 2.7
03_01_0547 + 4093196-4093657,4094267-4095148 28 2.7
03_01_0544 + 4082528-4082989,4083585-4084466 28 2.7
03_01_0543 + 4076981-4077442,4078145-4079026 28 2.7
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 28 3.6
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260... 27 4.7
04_03_0644 + 18337757-18337947,18339113-18339344 27 6.2
10_02_0110 - 5371536-5372882 27 8.2
07_03_0220 + 15323423-15324022,15324118-15324258,15324391-15324501 27 8.2
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 121 bits (292), Expect = 2e-28
Identities = 56/72 (77%), Positives = 64/72 (88%), Gaps = 1/72 (1%)
Frame = +3
Query: 210 DYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRH 386
DY++V K+A YLPH+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKK+MAVRIV+H
Sbjct: 31 DYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKIMAVRIVKH 90
Query: 387 AFDIIHLLTGEN 422
A +IIHLLT N
Sbjct: 91 AMEIIHLLTDAN 102
Score = 34.3 bits (75), Expect = 0.041
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2
Query: 146 EIKLFGRWSCYDVQVSDMSLS 208
E+KLF RWS DVQV+D+SL+
Sbjct: 10 EVKLFSRWSFEDVQVNDISLA 30
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 121 bits (291), Expect = 3e-28
Identities = 55/72 (76%), Positives = 64/72 (88%), Gaps = 1/72 (1%)
Frame = +3
Query: 210 DYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRH 386
DY++V K+A YLPH+AGRY+ KRFRKAQCP+VERLTNSLMMHGRNNGKK+MAVRIV+H
Sbjct: 32 DYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNSLMMHGRNNGKKIMAVRIVKH 91
Query: 387 AFDIIHLLTGEN 422
A +IIHLLT N
Sbjct: 92 AMEIIHLLTDAN 103
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 149 IKLFGRWSCYDVQVSDMSLS 208
+KLF WS DVQV+D+SL+
Sbjct: 12 VKLFNCWSFEDVQVNDISLA 31
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 115 VVHNHAARVGDFFGPVLLSHISHFYSQF 32
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 115 VVHNHAARVGDFFGPVLLSHISHFYSQF 32
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 115 VVHNHAARVGDFFGPVLLSHISHFYSQF 32
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 115 VVHNHAARVGDFFGPVLLSHISHFYSQF 32
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 306 VERLTNSLMMHGRNNGKKLMAVRIVRHAFDIIHLLTG 416
+ L ++HG N ++++AV ++ DI+HLL G
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRG 1364
>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
2602637-2602810,2603032-2603098,2603735-2603757,
2603899-2604001,2604087-2604848,2605098-2605292,
2605496-2606115,2606429-2606480,2606558-2607197,
2608366-2608574,2608660-2609189,2609500-2609566,
2609651-2609728,2610415-2610483,2610569-2610643
Length = 2021
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 204 CQD-YI-SVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLM 332
C D Y+ S+K++Y + L G + CP+ R NS++
Sbjct: 1438 CHDRYLFSLKQRYVRRLGFETGHIVDPDLGELLCPVCRRFANSIL 1482
>04_03_0644 + 18337757-18337947,18339113-18339344
Length = 140
Score = 27.1 bits (57), Expect = 6.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 168 GVVMTFKYRTCLCQDYISVKEKYAKYLPH 254
GV+ T Y+T L Q +S++ ++A+ L H
Sbjct: 96 GVIDTTNYKTILVQHVLSIQVEHAQELQH 124
>10_02_0110 - 5371536-5372882
Length = 448
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 71 WTEEVADAGGMVVDNMPLPQPADIPEIKL 157
W+ + DA ++ ++PLPQP +P + L
Sbjct: 81 WSRVITDAAVLLCRSLPLPQPV-LPRLAL 108
>07_03_0220 + 15323423-15324022,15324118-15324258,15324391-15324501
Length = 283
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 77 EEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLSGLY 217
E +AGG V + P PA + +I GRWS Y +++ + L+
Sbjct: 4 EADVEAGG--VRDYEDPPPAPLVDIDELGRWSLYRAVIAEFVATLLF 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,240,076
Number of Sequences: 37544
Number of extensions: 228459
Number of successful extensions: 563
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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