Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K07
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   128   2e-30
L23648-7|AAA28031.2|  962|Caenorhabditis elegans Abnormal cell l...    28   2.4  
AF104917-1|AAD22772.1|  962|Caenorhabditis elegans LIN-36 protein.     28   2.4  
Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z92827-4|CAB07323.1|  722|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr...    26   9.7  
Z54271-8|CAA91038.1|  185|Caenorhabditis elegans Hypothetical pr...    26   9.7  
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U58750-3|AAB00643.2|  350|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ...    26   9.7  
AF016447-3|AAG24018.1|  349|Caenorhabditis elegans Hypothetical ...    26   9.7  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  128 bits (309), Expect = 2e-30
 Identities = 59/71 (83%), Positives = 64/71 (90%)
 Frame = +3

Query: 210 DYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHA 389
           DYI VKEK AKYLPHSAGR+  +RFRKA CPIVERL NSLMMHGRNNGKKLM VRIV+HA
Sbjct: 43  DYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHA 102

Query: 390 FDIIHLLTGEN 422
           F+II+LLTGEN
Sbjct: 103 FEIIYLLTGEN 113



 Score = 34.3 bits (75), Expect = 0.036
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +2

Query: 65  ENWTEEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSL 205
           +NW  E      +V D  P     + PE+ LFG+WS   V VSD+SL
Sbjct: 3   DNWGSE-----NVVADAAPA---TEAPEVALFGKWSLQSVNVSDISL 41


>L23648-7|AAA28031.2|  962|Caenorhabditis elegans Abnormal cell
           lineage protein 36 protein.
          Length = 962

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 66  RTGPKKSPTRAAWLWTTCHYHS 131
           +T P K  +R  W+ T C +HS
Sbjct: 254 KTTPSKKSSRVPWVCTVCEFHS 275


>AF104917-1|AAD22772.1|  962|Caenorhabditis elegans LIN-36 protein.
          Length = 962

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 66  RTGPKKSPTRAAWLWTTCHYHS 131
           +T P K  +R  W+ T C +HS
Sbjct: 254 KTTPSKKSSRVPWVCTVCEFHS 275


>Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical
           protein T05E11.3 protein.
          Length = 760

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 85  DFFGPVLLSHISHFYSQFTNYNLAL 11
           DF  P  L ++ H YSQF N+++ L
Sbjct: 245 DFLEPDTLKNLVHKYSQFINFDIFL 269


>Z92827-4|CAB07323.1|  722|Caenorhabditis elegans Hypothetical
           protein C29F7.5 protein.
          Length = 722

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -2

Query: 142 NISRLW*WHVVHNHAARVGDFFGPVLLSHISHF 44
           + S  W WH+   H     DFFG    S  S F
Sbjct: 42  SFSGFWHWHLTMQHCNNENDFFGSFNSSSNSPF 74


>Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical
           protein T05E12.4 protein.
          Length = 345

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = -1

Query: 371 YSHKFLTIIAAVHH*GVSQTLHNRALSFTESFVSVPASRMW*IFCILLFYRNIILT---K 201
           YS     +++AV    V   +HNR     E  VSV  S    IF + + +  + +T   K
Sbjct: 109 YSVWLAVVMSAVRTLSVLFPMHNRIQKINEKTVSVRISIAVFIFVMFVDFTELAMTYRIK 168

Query: 200 TCPILERHNNS 168
             P +  +NNS
Sbjct: 169 WLPSILFYNNS 179


>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical protein
            T06D8.1a protein.
          Length = 3719

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 279  VCERTCQQNVVNILHTSLLP 220
            V E TC Q V   +H SLLP
Sbjct: 3689 VTEETCPQEVATQIHDSLLP 3708


>Z54271-8|CAA91038.1|  185|Caenorhabditis elegans Hypothetical
           protein F21D5.9 protein.
          Length = 185

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 291 AQCPIVERLTNSLMMHGRNNGKK 359
           A C  V RLT  L+ H RNN +K
Sbjct: 152 AVCGAVFRLTGDLVQHMRNNHRK 174


>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical protein
            T06D8.1a protein.
          Length = 3719

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 279  VCERTCQQNVVNILHTSLLP 220
            V E TC Q V   +H SLLP
Sbjct: 3689 VTEETCPQEVATQIHDSLLP 3708


>U58750-3|AAB00643.2|  350|Caenorhabditis elegans Hypothetical
           protein F55G1.6 protein.
          Length = 350

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 150 SNFLGDGVVMTFKYRTCLCQ 209
           SN+L DG V+ +K + C C+
Sbjct: 124 SNYLEDGDVLGYKLKPCFCR 143


>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
            protein T06D8.1a protein.
          Length = 3719

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 279  VCERTCQQNVVNILHTSLLP 220
            V E TC Q V   +H SLLP
Sbjct: 3689 VTEETCPQEVATQIHDSLLP 3708


>AF016447-3|AAG24018.1|  349|Caenorhabditis elegans Hypothetical
           protein C54F6.8 protein.
          Length = 349

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 291 LYGIVCERTCQQNVVNILHTSLLPKYNPDKDMSDT 187
           LY IV + T +   + I+  +LLP +   K +SDT
Sbjct: 312 LYQIVQKNTSEIQYIGIMTQALLPDFRVKKLVSDT 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,741,226
Number of Sequences: 27780
Number of extensions: 202418
Number of successful extensions: 401
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)