Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K06
         (95 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    23   4.1  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      23   5.4  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    23   7.1  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    22   9.4  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 66  N*FLEKVEKKIKKTLETS 13
           N F E V KK K+T+ETS
Sbjct: 189 NVFEETVSKKRKRTIETS 206


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 29  FFIFFSTFSKNQFIFVNL 82
           FF +FS FS   F+F +L
Sbjct: 110 FFFYFSLFSFFSFLFTSL 127


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 38  FFSTFSKNQFIFVNL 82
           FFS F +++F+FV +
Sbjct: 477 FFSNFKEHKFVFVRI 491


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 17  VSRVFFIFFSTFSKNQFIF 73
           +S++F ++FS+F    F+F
Sbjct: 139 LSQIFIVYFSSFPILHFLF 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,134
Number of Sequences: 5004
Number of extensions: 1328
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 13
effective length of database: 2,297,426
effective search space used: 41353668
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)