Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K06
         (95 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80450-7|AAB37832.1|  293|Caenorhabditis elegans Hypothetical pr...    29   0.58 
U88175-3|AAB42280.1|  295|Caenorhabditis elegans Hypothetical pr...    28   1.0  
U39852-8|AAK39261.2|  113|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>U80450-7|AAB37832.1|  293|Caenorhabditis elegans Hypothetical
           protein M01E11.1 protein.
          Length = 293

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query: 2   HEGELVSRV--FFIFFSTFSKNQFIFVNLVN 88
           HEGE++  +  +F+F S F   +F+F  L N
Sbjct: 96  HEGEVLEHLSHYFLFLSMFHFTEFVFTALTN 126


>U88175-3|AAB42280.1|  295|Caenorhabditis elegans Hypothetical
           protein F21F3.3 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +2

Query: 2   HEGEL---VSRVFFIFFSTFSKNQFIFVNLVN 88
           HEGEL    SR +F+F S F  ++F+F  L N
Sbjct: 98  HEGELWEYFSR-YFLFLSVFHFSEFVFTALTN 128


>U39852-8|AAK39261.2|  113|Caenorhabditis elegans Hypothetical
          protein K10C2.6 protein.
          Length = 113

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 32 FIFFSTFSKNQFIFVNLVNII 94
          + FF T+ KN  IF+N  N +
Sbjct: 20 YFFFETYHKNFEIFLNFTNSV 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,170,370
Number of Sequences: 27780
Number of extensions: 7431
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 12,740,198
effective HSP length: 13
effective length of database: 12,379,058
effective search space used: 222823044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)