Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K05
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...   108   2e-25
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...   107   5e-25
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   2.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   6.5  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    24   6.5  
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    23   8.6  
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|...    23   8.6  
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    23   8.6  

>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score =  108 bits (260), Expect = 2e-25
 Identities = 47/81 (58%), Positives = 60/81 (74%), Gaps = 2/81 (2%)
 Frame = -2

Query: 323 TGKYGTRYGASLRNMVKKMEVTQHATYTCSFCGKDAMKRSCVNIWSC--KRCKRTVAGGA 150
           TGKYG RYGASLR  V+K+EV QH+ Y C FCG++ +KR+   IW C  K CK+ +AGGA
Sbjct: 11  TGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGKGCKKVLAGGA 70

Query: 149 WVFSTTAASSCRSAVRRLREV 87
           W  +T AA+S RS +RRLRE+
Sbjct: 71  WTVTTAAATSARSTIRRLREM 91


>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score =  107 bits (256), Expect = 5e-25
 Identities = 47/81 (58%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
 Frame = -2

Query: 323 TGKYGTRYGASLRNMVKKMEVTQHATYTCSFCGKDAMKRSCVNIWSC--KRCKRTVAGGA 150
           TGKYG RYGASLR  V+K+EV QH+ Y C FCG+  +KR+   IW C  K C +T+AGGA
Sbjct: 11  TGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKGCSKTLAGGA 70

Query: 149 WVFSTTAASSCRSAVRRLREV 87
           W  +T AA+S RS +RRLRE+
Sbjct: 71  WTVTTAAATSARSTIRRLREM 91


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 242 TCSFCGKDAMKRSCVNIWSCKRCKR 168
           +C  C +  +K  C  +W C+ CK+
Sbjct: 21  SCRECHR--LKLKCDRVWPCENCKK 43


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +1

Query: 142 NTQAPPATVL-LHRLHDQMFTHER 210
           N+Q  P  V  LH+LH  +FT  R
Sbjct: 87  NSQLEPLEVFHLHKLHSAVFTSRR 110


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -2

Query: 245 YTCSFCGKDAMKRSCVNIWSCKRCKRTVA 159
           Y C  CG     + C  I S  RC +  A
Sbjct: 111 YACQNCGTSYCSKGCEVIHSETRCMKVYA 139


>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -2

Query: 242 TCSFCGKDAMKRSCVNIWSCKRCKRTVAG 156
           TC+ CG  A K    N W  K  +R   G
Sbjct: 33  TCACCGYPAAKTRSYN-WGAKAKRRRTTG 60


>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 194 IWSCKRCKRT 165
           IW+CK C++T
Sbjct: 65  IWTCKNCRKT 74


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -2

Query: 242 TCSFCGKDAMKRSCVNIWSCKRCKRTVAG 156
           TC+ CG  A K    N W  K  +R   G
Sbjct: 33  TCACCGYPAAKTRSYN-WGAKAKRRRTTG 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,078,372
Number of Sequences: 5004
Number of extensions: 17139
Number of successful extensions: 48
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)