Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_K05
(324 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 109 5e-25
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 109 5e-25
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116... 29 1.1
06_03_0749 + 24133302-24134274,24134585-24135272,24135751-241358... 27 4.5
08_01_0799 + 7734031-7735102,7735453-7735475 26 5.9
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 26 5.9
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005... 26 5.9
11_01_0401 - 3020606-3020932,3021480-3021626,3021711-3021878,302... 26 7.8
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 109 bits (262), Expect = 5e-25
Identities = 47/77 (61%), Positives = 57/77 (74%)
Frame = -2
Query: 320 GKYGTRYGASLRNMVKKMEVTQHATYTCSFCGKDAMKRSCVNIWSCKRCKRTVAGGAWVF 141
GKYGTRYGASLR +KKMEV+QH+ Y C FCGK A+KR V IW CK C + AGGA+
Sbjct: 37 GKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTM 96
Query: 140 STTAASSCRSAVRRLRE 90
+T +A + RS +RRLRE
Sbjct: 97 NTASAVTVRSTIRRLRE 113
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 109 bits (262), Expect = 5e-25
Identities = 47/77 (61%), Positives = 57/77 (74%)
Frame = -2
Query: 320 GKYGTRYGASLRNMVKKMEVTQHATYTCSFCGKDAMKRSCVNIWSCKRCKRTVAGGAWVF 141
GKYGTRYGASLR +KKMEV+QH+ Y C FCGK A+KR V IW CK C + AGGA+
Sbjct: 42 GKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTM 101
Query: 140 STTAASSCRSAVRRLRE 90
+T +A + RS +RRLRE
Sbjct: 102 NTASAVTVRSTIRRLRE 118
>12_01_0151 -
1158834-1159703,1159917-1160092,1160144-1162097,
1162360-1162620,1162729-1162916,1164127-1164166
Length = 1162
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 255 LSYFHLFDHVT*RCTITCAIF 317
LSYFHL DH+ +C + C+IF
Sbjct: 314 LSYFHLPDHLK-QCFVYCSIF 333
>06_03_0749 +
24133302-24134274,24134585-24135272,24135751-24135857,
24137565-24137815
Length = 672
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 167 FSCTVYMTRCLHMNVSWHPCRRMSKCMSRVELLPSF 274
+ C+V CL V HPC +S S +++ F
Sbjct: 613 YICSVARANCLPSPVPSHPCAHVSLSTSAIQITLQF 648
>08_01_0799 + 7734031-7735102,7735453-7735475
Length = 364
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 300 WCI-FT*HGQKDGSNSTRDIHLLILRQGC 217
WCI F HG+ DG+ ++L +L + C
Sbjct: 53 WCIRFYPHGKGDGAKDYISVYLELLTKNC 81
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -2
Query: 230 CGKDAMKRSCVNIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRLR 93
C +KR+ W C RC+ + + A +S R RR+R
Sbjct: 58 CLNPPLKRAPPGNWQCPRCRTKKVSLKLLDNADADTSKRERTRRMR 103
>01_06_0787 -
31999632-32000045,32000128-32000214,32000295-32000584,
32000670-32000844,32000930-32001142,32001227-32001328,
32001418-32001822,32001922-32002134,32002312-32002357,
32002602-32002867,32003936-32004012,32004095-32004170,
32004339-32004418,32004945-32005036,32005132-32005171,
32005301-32005400,32005815-32005962,32006071-32006153,
32006207-32006383
Length = 1027
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -2
Query: 227 GKDAMKRSCVNIWSCKRCKRTVAGGAWVFSTTAASSCRSAV 105
GKD + +CV ++ + + GG WV + C S +
Sbjct: 880 GKD--RTNCVTAYAARPEEEEERGGKWVLQDVCTNPCESTI 918
>11_01_0401 -
3020606-3020932,3021480-3021626,3021711-3021878,
3021960-3022218,3024469-3024522,3025200-3025375
Length = 376
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = -2
Query: 239 CSFCGKDAMKRSCVNIWSCKRCKRTVAGGAW 147
C + G + ++ CV+IW+ R G W
Sbjct: 284 CRYIGPNKLRNFCVDIWNWLRAVPEKLQGKW 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,450,403
Number of Sequences: 37544
Number of extensions: 123239
Number of successful extensions: 337
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -