Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K05
         (324 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical ...   122   8e-29
Z70287-1|CAA94302.3|  294|Caenorhabditis elegans Hypothetical pr...    29   0.58 
U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical pr...    27   2.3  
AF039048-9|AAB94233.1|  362|Caenorhabditis elegans Hypothetical ...    27   3.1  
AF039048-8|AAT68896.1|  367|Caenorhabditis elegans Hypothetical ...    27   3.1  
U97003-6|AAB52273.1|  402|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    26   5.4  
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr...    26   7.2  
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro...    26   7.2  
AC026301-1|AAK68897.1|  280|Caenorhabditis elegans Hypothetical ...    26   7.2  
Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z32673-1|CAA83585.1|  472|Caenorhabditis elegans transcription f...    25   9.5  
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U41535-12|AAK67251.1|  438|Caenorhabditis elegans Abnormal cell ...    25   9.5  
AL034489-9|CAI79279.1|  162|Caenorhabditis elegans Hypothetical ...    25   9.5  
AJ130957-1|CAA10262.1|  438|Caenorhabditis elegans LIN-26B protein.    25   9.5  
AC024826-17|AAF60789.1|  662|Caenorhabditis elegans Hypothetical...    25   9.5  

>AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical
           protein Y48B6A.2 protein.
          Length = 91

 Score =  122 bits (293), Expect = 8e-29
 Identities = 50/79 (63%), Positives = 63/79 (79%)
 Frame = -2

Query: 320 GKYGTRYGASLRNMVKKMEVTQHATYTCSFCGKDAMKRSCVNIWSCKRCKRTVAGGAWVF 141
           GKYGTRYGASLR M KK+EV QH+ YTCSFCGK+AMKR    IW+C +C + VAGGA+V+
Sbjct: 12  GKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKCHKVVAGGAYVY 71

Query: 140 STTAASSCRSAVRRLREVK 84
            T  A++ RS +RRLR++K
Sbjct: 72  GTVTAATVRSTIRRLRDLK 90


>Z70287-1|CAA94302.3|  294|Caenorhabditis elegans Hypothetical
           protein R09E10.1 protein.
          Length = 294

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 200 HMNVSWHPCRRMSKCMSRVELLPSF 274
           ++N   +  RR SKC  RVEL PS+
Sbjct: 261 YVNAKIYASRRNSKCFRRVELFPSY 285


>U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical
           protein C33G8.8 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +2

Query: 194 CLHMNVSWHPCR--RMSKCMS 250
           CLH   S HPCR  RM KC++
Sbjct: 42  CLHRLPSSHPCRHCRMEKCIA 62


>AF039048-9|AAB94233.1|  362|Caenorhabditis elegans Hypothetical
           protein F16B4.2a protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 212 KRSCVNIWSCKRCKRTVAGGAWVFSTT 132
           K  C+  W+C  C +T+   +W F +T
Sbjct: 333 KEKCILDWTCSTCDKTIE--SWYFRST 357


>AF039048-8|AAT68896.1|  367|Caenorhabditis elegans Hypothetical
           protein F16B4.2b protein.
          Length = 367

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 212 KRSCVNIWSCKRCKRTVAGGAWVFSTT 132
           K  C+  W+C  C +T+   +W F +T
Sbjct: 338 KEKCILDWTCSTCDKTIE--SWYFRST 362


>U97003-6|AAB52273.1|  402|Caenorhabditis elegans Hypothetical
           protein F47C10.8 protein.
          Length = 402

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 269 MEVTQHATYTCSFCGKDAMKRSCVN--IWSCKRCK 171
           ME++      C+ CG+DA   SC N  + SC  CK
Sbjct: 59  MELSTSNAPKCTICGRDA---SCHNYGVLSCNACK 90


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 242  TCSFCGKDAMKRSCVNIWSCKRCKRTVAGGAWVFSTTAASSC 117
            TC  CG++  KR C+++     C     G A   S  A+S C
Sbjct: 1119 TCGSCGQETRKRKCLSLQYGCAC----TGNATDTSVCASSVC 1156


>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
           protein F33C8.1a protein.
          Length = 1271

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 212 SWHPCRRMSKCMSRVELLPSF 274
           +W+P  + S C+S+ +L P+F
Sbjct: 736 TWYPIDKASPCVSKEDLSPAF 756


>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
           protein.
          Length = 1329

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 212 SWHPCRRMSKCMSRVELLPSF 274
           +W+P  + S C+S+ +L P+F
Sbjct: 736 TWYPIDKASPCVSKEDLSPAF 756


>AC026301-1|AAK68897.1|  280|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.6 protein.
          Length = 280

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
 Frame = -2

Query: 200 VNIWSCKRCKR-----TVAGGAWVFSTTAASSCRSAV 105
           VN+W C+ C++      V+    V+ST   +SC + V
Sbjct: 141 VNLWKCQTCRKKYSSQDVSRTPRVYSTCGHTSCEACV 177


>Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical
           protein F35E8.6 protein.
          Length = 272

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 224 KDAMKRSCVNIWSCKRCKRTVAGGAWVFSTTAA 126
           +D + ++C    +CKRC  T A  A   +TTAA
Sbjct: 177 QDFVNKNCQK--TCKRCPATTAAPAAGVTTTAA 207


>Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical
           protein F17C11.1 protein.
          Length = 172

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 230 CGKDAMKRSCVNIWSCKRCKRTVAGGAWVFSTTAASSCRS 111
           CGK  + R+C  +    +C        W F+TTAA++  S
Sbjct: 69  CGKSPVNRNCTALVPDSKCV-----FKWAFATTAAATACS 103


>Z32673-1|CAA83585.1|  472|Caenorhabditis elegans transcription
           factor protein.
          Length = 472

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 251 ATYTCSFCGKDAMKRSCVNIWSCKR 177
           ATY C+ CGK     S  + W+  R
Sbjct: 333 ATYKCALCGKPTTLNSTGSRWNLLR 357


>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical
           protein F45E4.3a protein.
          Length = 1231

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = -2

Query: 308 TRYGASLRNMVKKMEVTQHATYTCSFCGKDAMKRSCVNIWSCKRCKRTVAGGAWVFSTTA 129
           T+    ++ M  +M+  QH T+   +  +DA+ R      S +R + T    +   ST +
Sbjct: 780 TQQQGLIQQMPMQMQQQQHNTFDARWPKEDALSRMYATA-SRRRAQETALTSSNKISTGS 838

Query: 128 ASSCRSAVR 102
            S  R  +R
Sbjct: 839 RSYARRPIR 847


>U41535-12|AAK67251.1|  438|Caenorhabditis elegans Abnormal cell
           lineage protein 26 protein.
          Length = 438

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 251 ATYTCSFCGKDAMKRSCVNIWSCKR 177
           ATY C+ CGK     S  + W+  R
Sbjct: 299 ATYKCALCGKPTTLNSTGSRWNLLR 323


>AL034489-9|CAI79279.1|  162|Caenorhabditis elegans Hypothetical
           protein Y7A5A.11 protein.
          Length = 162

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 258 STRDIHLLILRQG 220
           +TRD+HLL+L QG
Sbjct: 114 TTRDLHLLVLEQG 126


>AJ130957-1|CAA10262.1|  438|Caenorhabditis elegans LIN-26B protein.
          Length = 438

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 251 ATYTCSFCGKDAMKRSCVNIWSCKR 177
           ATY C+ CGK     S  + W+  R
Sbjct: 299 ATYKCALCGKPTTLNSTGSRWNLLR 323


>AC024826-17|AAF60789.1|  662|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.14 protein.
          Length = 662

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -2

Query: 302 YGASLRNMVKKMEVTQHATYTCSFCGKDAMKRSCVNIW--SCKRCKRTVAGGAWVFSTTA 129
           Y +SL   ++K   T+ + Y+C  CGK   ++  +NI    C+  K  +      FS   
Sbjct: 367 YASSLYIHMRKH--TEKSAYSCDGCGKPYSQKISLNIHQDQCEAFKNRLKTTDSQFSHNC 424

Query: 128 ASSCRSAVRRL 96
               +S V+R+
Sbjct: 425 DGCGKSFVQRI 435


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,145,910
Number of Sequences: 27780
Number of extensions: 106354
Number of successful extensions: 314
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)