Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K05
         (324 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   3.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   4.9  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    20   6.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   6.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   8.6  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    20   8.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    20   8.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -2

Query: 260 TQHATYTCSFCGK 222
           T    YTC  CGK
Sbjct: 227 TGEKPYTCDICGK 239


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -1

Query: 315 IWHTLWCIF 289
           +WH LW +F
Sbjct: 1   MWHFLWIVF 9


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 206 SCVNIWSCKRC 174
           SC N W+ K C
Sbjct: 100 SCNNYWNTKNC 110


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -2

Query: 245 YTCSFCGK 222
           YTC  CGK
Sbjct: 372 YTCDVCGK 379


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 218 AMKRSCVNIWSCKRCKRTVAGGAWVFSTTA 129
           A  R   N W+  RC + +  G  V S  A
Sbjct: 298 AHPREEFNHWTVMRCVQAMIAGIVVISAGA 327


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 221 PCRRMSKCMSRVEL 262
           PCR  ++C++R+ L
Sbjct: 478 PCRCHARCIARLAL 491


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 221 PCRRMSKCMSRVEL 262
           PCR  ++C++R+ L
Sbjct: 478 PCRCHARCIARLAL 491


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,838
Number of Sequences: 438
Number of extensions: 1218
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)