Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K04
         (137 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    27   0.45 
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    27   0.45 
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    27   0.45 
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   5.5  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    22   9.6  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
          protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +3

Query: 57 RGPQKHLKRLNAP 95
          RGP+KHLKR+ AP
Sbjct: 3  RGPKKHLKRVAAP 15


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
          S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +3

Query: 57 RGPQKHLKRLNAP 95
          RGP+KHLKR+ AP
Sbjct: 3  RGPKKHLKRVAAP 15


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
          S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +3

Query: 57 RGPQKHLKRLNAP 95
          RGP+KHLKR+ AP
Sbjct: 3  RGPKKHLKRVAAP 15


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 93  GRLNASSASVARAPMLNKTLNKKA*CRIP 7
           GR+ +  AS   +P+L +  NK A C +P
Sbjct: 223 GRVFSFPASFVASPLLLEDCNKIASCDLP 251


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 78  KRLNAPKA*DVGQAGR 125
           +RLN P   D+G+ GR
Sbjct: 368 ERLNIPSTPDIGEEGR 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 533,703
Number of Sequences: 5004
Number of extensions: 6008
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 26
effective length of database: 2,232,374
effective search space used: 42415106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)