Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K04
         (137 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31...    31   0.17 
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972...    31   0.17 
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496...    29   0.69 
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848...    28   1.2  
09_04_0108 + 14657020-14657193,14659040-14659355,14659728-146598...    26   4.8  
12_02_0156 - 14532000-14532098,14532669-14534330,14534445-145346...    25   8.5  

>02_01_0047 -
          316960-317397,317647-317744,317837-318017,
          318122-318199,319023-319025
          Length = 265

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +3

Query: 54 ARGPQKHLKRLNAPK 98
          ARG +KHLKRLNAPK
Sbjct: 2  ARGLKKHLKRLNAPK 16



 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 97  KHRMLDKLGGVYA 135
           KH MLDKLGG +A
Sbjct: 16  KHWMLDKLGGAFA 28


>01_03_0277 +
          14496298-14496300,14496875-14496952,14497061-14497241,
          14497348-14497445,14497542-14497979
          Length = 265

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +3

Query: 54 ARGPQKHLKRLNAPK 98
          ARG +KHLKRLNAPK
Sbjct: 2  ARGLKKHLKRLNAPK 16



 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 97  KHRMLDKLGGVYA 135
           KH MLDKLGG +A
Sbjct: 16  KHWMLDKLGGAFA 28


>05_04_0058 +
          17548945-17548947,17549234-17549281,17549618-17549695,
          17549952-17550132,17550223-17550320,17550827-17551258
          Length = 279

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +3

Query: 54 ARGPQKHLKRLNAP 95
          ARG +KHLKRLNAP
Sbjct: 18 ARGLKKHLKRLNAP 31


>07_03_0435 +
           18182657-18183509,18184477-18184574,18184663-18184833,
           18185524-18185624,18185702-18185837,18186007-18186057,
           18186202-18186489,18186610-18186844,18186924-18187204,
           18187336-18187557
          Length = 811

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 71  ALEAFKRP*SIGCWTSWAAC 130
           +LE ++ P  I CW  WA C
Sbjct: 789 SLEPYRLPEKISCWFRWAKC 808


>09_04_0108 +
           14657020-14657193,14659040-14659355,14659728-14659887,
           14661265-14661725,14663778-14663856,14664732-14664882,
           14665414-14665467,14665724-14665888
          Length = 519

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 127 RRPACPTSYALGAFKRFKCFCGPRAYVEQN 38
           RRPA P    +G      CF  P+A V  N
Sbjct: 397 RRPAAPCMVVVGEGTTLSCFVIPKAVVLAN 426


>12_02_0156 -
           14532000-14532098,14532669-14534330,14534445-14534660,
           14534730-14534907,14535065-14535276
          Length = 788

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 118 ACPTSYALGAFKRFKC 71
           ACPT    G FKRF C
Sbjct: 420 ACPTLGKSGNFKRFNC 435


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,815,708
Number of Sequences: 37544
Number of extensions: 45863
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 14,793,348
effective HSP length: 26
effective length of database: 13,817,204
effective search space used: 262526876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)