Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K04
         (137 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...    28   1.0  
Z49967-10|CAA90254.1|  553|Caenorhabditis elegans Hypothetical p...    25   7.4  
U53344-3|AAA96224.1|  702|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
          protein, small subunitprotein 4 protein.
          Length = 259

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +3

Query: 57 RGPQKHLKRLNAP 95
          RGP+KHLKRL AP
Sbjct: 2  RGPKKHLKRLAAP 14



 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +1

Query: 100 HRMLDKLGGVYA 135
           H MLDKLGGV+A
Sbjct: 16  HWMLDKLGGVFA 27


>Z49967-10|CAA90254.1|  553|Caenorhabditis elegans Hypothetical
           protein F54C9.8 protein.
          Length = 553

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 4   CRNSALGFLVQSFVQH 51
           CR++A  F++Q FV+H
Sbjct: 197 CRSAAGNFIIQKFVEH 212


>U53344-3|AAA96224.1|  702|Caenorhabditis elegans Hypothetical
           protein T07H6.4 protein.
          Length = 702

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -2

Query: 130 TRRPACPTSYALGAFKRFKCFCGPRAYVEQN 38
           TR     TSY  G    FKC  G     EQN
Sbjct: 529 TRMTVTVTSYRTGGVAHFKCHKGFTLIGEQN 559


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,061
Number of Sequences: 27780
Number of extensions: 36397
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 12,740,198
effective HSP length: 26
effective length of database: 12,017,918
effective search space used: 228340442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)