Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K03
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    27   1.0  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   3.1  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   4.1  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    24   7.1  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    24   7.1  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    24   9.4  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   9.4  

>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 284 VLYQVVSQLSPCARIVSGPDINKAMKLQHELQSR 183
           VL Q ++++SP  ++VS    NK+++    L+ R
Sbjct: 164 VLKQAIAEISPLMKLVSAKRFNKSVEFPMPLKER 197


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 221 LCQGQTRCGHTATVGKLLDTVLDT 292
           +  G TRCG    V KLL+ + DT
Sbjct: 745 MVNGPTRCGKHVLVCKLLEVLQDT 768


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 350 ETYNKRNTA-KDPKMQREPRAYRVL 279
           E   +RN   KDPK+ R+P+  R+L
Sbjct: 483 EARRRRNAVRKDPKLSRQPQVGRLL 507


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 225 HK*GNETPTRAPIAINLFVCPFVVPSSRTSLNDTCPVIGRAGARNDTNRCAQASASSS-F 49
           HK G     RA   + +F C F+   S+T       ++G +      ++CA  + S++ F
Sbjct: 325 HKNGTSNH-RAGAVMIVFSCLFIFSFSQTWAPAAYVIVGESYPVRYRSKCAAVATSANWF 383

Query: 48  W 46
           W
Sbjct: 384 W 384


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 338 KRNTAKDPKMQREPRAYRVLYQVVSQLSPCARIVSGPDINKAMKLQHE 195
           +R  A + +M +E R       ++++    AR+++GPD  K +   HE
Sbjct: 235 RRLQANEKRMSKEER------NLLNKTKAFARLLTGPDYQKFVNSYHE 276


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 23  TARKGIVPQKDEEADAWAQR 82
           T  +GI+P+  EEA  WA +
Sbjct: 838 TGSEGILPKNGEEALLWAHK 857


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 290 TREALFAFWDPLPYCAYY 343
           T+     +WDP  YC+ Y
Sbjct: 310 TKTGYLVYWDPELYCSIY 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,683,582
Number of Sequences: 5004
Number of extensions: 32755
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)