Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_K03
(384 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1834 + 40214378-40214563,40214728-40214818,40215006-402150... 31 0.41
11_01_0776 + 6476743-6477539,6478658-6479481,6479803-6480790,648... 29 1.7
04_03_0824 + 20086639-20087263,20087282-20087463,20087569-200877... 28 2.2
04_01_0352 - 4619946-4619984,4620062-4620133,4621515-4621880,462... 28 2.2
03_05_0111 - 20919291-20919439,20920128-20920237,20920341-209204... 27 3.8
07_01_0752 - 5783305-5783416,5783739-5783836,5784550-5784675,578... 27 5.1
04_04_1247 - 32043776-32043880,32044296-32044505,32044595-320451... 27 5.1
10_08_0786 - 20540061-20542106 27 6.7
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664... 27 6.7
12_01_0229 + 1731288-1732513,1733037-1733106,1733267-1734001 26 8.9
08_01_0075 - 533839-534642,534653-534706,534890-534961,535377-53... 26 8.9
01_05_0657 + 24034198-24036306 26 8.9
>01_06_1834 +
40214378-40214563,40214728-40214818,40215006-40215093,
40215444-40215695,40215927-40216101,40216243-40216329,
40216445-40216513,40216638-40216734,40217010-40217092,
40217373-40217480,40217672-40217793,40217921-40218028,
40218121-40218194,40218492-40218617,40219655-40219722,
40219930-40220079,40220164-40220214,40220678-40220734,
40220824-40220970,40221064-40221155,40221516-40221625,
40221728-40221791,40221883-40222032,40222554-40222788
Length = 929
Score = 30.7 bits (66), Expect = 0.41
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = -2
Query: 344 YNKRNTAKDPKMQREPRAYRVLYQVVSQLSPCARIVSGPDINKAMKLQHELQSRSIYSCV 165
Y KRNT DP R + Y ++S L A GP ++A +L EL+S I + V
Sbjct: 747 YMKRNTEHDPPYWRGAIWINMNYMILSGLHHYAH-EDGPYKDRAKELYDELRSNLIRNIV 805
Query: 164 RS 159
++
Sbjct: 806 KN 807
>11_01_0776 +
6476743-6477539,6478658-6479481,6479803-6480790,
6482633-6483545
Length = 1173
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 204 EFHCLIYVRARHDAGTRRQLGNYLIQYSIRARLS 305
+F C +VRA RR LG L Q +R R+S
Sbjct: 213 QFDCHAFVRASRKPDMRRLLGAILSQVQLRIRIS 246
>04_03_0824 +
20086639-20087263,20087282-20087463,20087569-20087724,
20087867-20087989,20088079-20088247,20088384-20088466,
20088641-20088742,20089246-20089359,20089735-20089811,
20089884-20089962,20090060-20090128,20090235-20090410,
20090460-20090561,20090678-20090768,20090878-20090976,
20091141-20091326
Length = 810
Score = 28.3 bits (60), Expect = 2.2
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +1
Query: 187 DWSSCWSFI-----ALFMSGPDTMRAHGDSWETT*YSTRYARGSLCILGS 321
D S CW + +F + P +RA + T Y TRY+R SL +LGS
Sbjct: 486 DPSRCWDVVDKYGVTIFYTAPTLIRAL--MRDGTEYVTRYSRKSLRVLGS 533
>04_01_0352 -
4619946-4619984,4620062-4620133,4621515-4621880,
4622240-4622713
Length = 316
Score = 28.3 bits (60), Expect = 2.2
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Frame = +2
Query: 197 RVGVSLPYLCQGQTRCGHTATVGKLLDTVL------DTREALFAFWDPLPYCAYYKSRMP 358
R GV P Q G TA V L+ L D+R L DPLP + +K P
Sbjct: 225 RAGVPCPLSGQTGAIIGSTAVVALLVRDRLVVSNCGDSRAVLCRAGDPLPLSSDHKPDRP 284
Query: 359 DER 367
DE+
Sbjct: 285 DEK 287
>03_05_0111 -
20919291-20919439,20920128-20920237,20920341-20920466,
20920545-20920632,20920933-20921053,20921159-20921231,
20921399-20921462,20921543-20921739,20921844-20921899,
20922050-20922146,20923731-20923870
Length = 406
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -3
Query: 205 SNTSSNRDQSIRVSVRSAFFANKSK*HM-PSHRPGGCKKRYKSLRPGVCFFVLLGHNPLS 29
S ++ R + + + +AF + K + + + P G K+R G+ ++GH+ S
Sbjct: 129 SESTGKRRYFMVIGINTAFSSRKRRDSLRATWMPQGEKRRKLEEEKGIIIRFVIGHSATS 188
Query: 28 RGVTPRA 8
G+ RA
Sbjct: 189 GGILDRA 195
>07_01_0752 -
5783305-5783416,5783739-5783836,5784550-5784675,
5784890-5785090,5785185-5785268,5785519-5785566,
5785709-5785763,5786130-5786185,5786281-5786365,
5786485-5786558,5787093-5787159,5788134-5788216
Length = 362
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 154 AFFANKSK*HMPSHRPGGCKKR-YKSLRPGVCFFV 53
A +A ++ H P P GC K Y+ L+PG CF V
Sbjct: 171 AVYAIEATCHAPD--PVGCYKEIYRVLKPGQCFAV 203
>04_04_1247 -
32043776-32043880,32044296-32044505,32044595-32045101,
32045362-32045583,32046054-32046184,32046737-32047745,
32047830-32047904,32047995-32048066,32048153-32048328,
32048494-32048646,32048739-32049234
Length = 1051
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 377 EPDGVRPAFETYNKRNTAKDPKMQREPR 294
E G+ PAF NKR +PK +++P+
Sbjct: 522 ETYGLCPAFSIGNKRKKDSEPKKKKKPK 549
>10_08_0786 - 20540061-20542106
Length = 681
Score = 26.6 bits (56), Expect = 6.7
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Frame = +2
Query: 8 GTRGDTARKGI-VPQKDEEADAWAQRFVSFLAPARPMTGHVSFRLVREEGTTNGHTNRLI 184
G GD + + +P++D W+ F++ +P+ +R +RE+G + ++
Sbjct: 157 GAMGDAVKVFVRMPRRDRVT--WSTMVAGFVSAGQPLDAIQMYRRMREDGVKG---DEVV 211
Query: 185 AIGA-RVGVSLPYLCQGQTRCGHTATVGKLLDTVLDT 292
IG + + + G + GH G +D V T
Sbjct: 212 MIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTAT 248
>09_06_0328 +
22365308-22365415,22365743-22366018,22366166-22366417,
22366542-22366939,22367028-22368021,22368199-22368409,
22368515-22368749,22368874-22368996,22369190-22369310,
22369416-22369625
Length = 975
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 82 SLRPGVCFFVLLGHNPLSRGVT 17
S+ G+C VL GH+ L +GVT
Sbjct: 153 SMANGICTAVLRGHSSLVKGVT 174
>12_01_0229 + 1731288-1732513,1733037-1733106,1733267-1734001
Length = 676
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 17 GDTARKGIVPQKDEEADAW 73
G +AR +V + D EADAW
Sbjct: 203 GGSARTAVVEEYDPEADAW 221
>08_01_0075 -
533839-534642,534653-534706,534890-534961,535377-535379
Length = 310
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -1
Query: 153 PSSRTSLNDT-CPVIGRAGARNDTNRCAQASASSS 52
PS +S + P++GR+G+R D + + +AS++
Sbjct: 197 PSDSSSCTSSKVPLLGRSGSRKDKKKAKEKAASAA 231
>01_05_0657 + 24034198-24036306
Length = 702
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 161 NGHTNRLIAIGARVGVSL 214
NG NRLI +GAR+G L
Sbjct: 615 NGGDNRLIVLGARLGCQL 632
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,043,433
Number of Sequences: 37544
Number of extensions: 250058
Number of successful extensions: 695
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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