Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_K02
(406 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53148-5|AAB37076.1| 130|Caenorhabditis elegans Ribosomal prote... 86 1e-17
U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 30 0.73
U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defecti... 29 0.96
U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defecti... 29 0.96
U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defecti... 29 0.96
AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity... 29 0.96
Z81043-4|CAB02798.1| 179|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z74040-3|CAB54276.3| 246|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z74040-2|CAA98513.1| 287|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z74040-1|CAA98514.2| 340|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z83226-4|CAI79261.2| 206|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z66519-6|CAA91374.3| 394|Caenorhabditis elegans Hypothetical pr... 27 6.8
AF000194-3|AAK39379.1| 191|Caenorhabditis elegans Hypothetical ... 27 6.8
AC006748-6|AAF60516.1| 582|Caenorhabditis elegans Hypothetical ... 26 9.0
AC006748-5|AAX55685.1| 471|Caenorhabditis elegans Hypothetical ... 26 9.0
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 23 9.7
>U53148-5|AAB37076.1| 130|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 30 protein.
Length = 130
Score = 85.8 bits (203), Expect = 1e-17
Identities = 53/135 (39%), Positives = 72/135 (53%), Gaps = 5/135 (3%)
Frame = +1
Query: 13 MQLHIRG--QSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSEL- 183
MQ+ + G +TH LDV+ ++ IK + EE ++S L + + E
Sbjct: 1 MQIFLLGLDNTTHTLDVDASTTLSAIKGVIGA-----GEEFSISYGSKVLSEELTLGECQ 55
Query: 184 --SSTELDLTVPLLGGKVHGSLARAGKVKGQTPKVEXXXXXXXXXXXXXXXIQYNRRFVN 357
S + L + LLGGKVHGSLARAGKV+ QTPKV+ +QY RR+VN
Sbjct: 56 IESLSTLSVNGRLLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVN 115
Query: 358 VVQTFGRRRGPNSNS 402
V G++RGPNSNS
Sbjct: 116 VASGPGKKRGPNSNS 130
>U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical
protein C16C8.4 protein.
Length = 226
Score = 29.9 bits (64), Expect = 0.73
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 40 THVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSE 180
++ ++ ++++ DIKN + D+ LS G LED C + +
Sbjct: 164 SYAFKIHREDTVFDIKNDIEHRHDIPQHSYWLSFSGKRLEDHCSIGD 210
>U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defective
protein 1, isoformc protein.
Length = 721
Score = 29.5 bits (63), Expect = 0.96
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 76 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 252
G ++ + L A++ES + + + D+ +++ L L +L PL+ ++HG L A
Sbjct: 528 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 587
Query: 253 GKV 261
V
Sbjct: 588 ASV 590
>U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defective
protein 1, isoformb protein.
Length = 942
Score = 29.5 bits (63), Expect = 0.96
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 76 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 252
G ++ + L A++ES + + + D+ +++ L L +L PL+ ++HG L A
Sbjct: 726 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 785
Query: 253 GKV 261
V
Sbjct: 786 ASV 788
>U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defective
protein 1, isoforma protein.
Length = 987
Score = 29.5 bits (63), Expect = 0.96
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 76 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 252
G ++ + L A++ES + + + D+ +++ L L +L PL+ ++HG L A
Sbjct: 794 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 853
Query: 253 GKV 261
V
Sbjct: 854 ASV 856
>AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity
specification proteinSYD-1 protein.
Length = 942
Score = 29.5 bits (63), Expect = 0.96
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 76 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 252
G ++ + L A++ES + + + D+ +++ L L +L PL+ ++HG L A
Sbjct: 726 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 785
Query: 253 GKV 261
V
Sbjct: 786 ASV 788
>Z81043-4|CAB02798.1| 179|Caenorhabditis elegans Hypothetical
protein C29F3.5 protein.
Length = 179
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 311 VLFVFFCCFSTLGVWPLTLPARARDPCTLP 222
++F FFC FS G P+T P +P +P
Sbjct: 6 IIFAFFCMFSVEGCIPMTPP---EEPVVVP 32
>Z74040-3|CAB54276.3| 246|Caenorhabditis elegans Hypothetical
protein K10D6.2c protein.
Length = 246
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -1
Query: 349 ISCCIGSCA*HVRSSSFSFAVSLLWA 272
IS C G CA V S++F+F++SL A
Sbjct: 128 ISICSGVCAPCVPSTAFAFSISLFIA 153
>Z74040-2|CAA98513.1| 287|Caenorhabditis elegans Hypothetical
protein K10D6.2b protein.
Length = 287
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -1
Query: 349 ISCCIGSCA*HVRSSSFSFAVSLLWA 272
IS C G CA V S++F+F++SL A
Sbjct: 128 ISICSGVCAPCVPSTAFAFSISLFIA 153
>Z74040-1|CAA98514.2| 340|Caenorhabditis elegans Hypothetical
protein K10D6.2a protein.
Length = 340
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -1
Query: 349 ISCCIGSCA*HVRSSSFSFAVSLLWA 272
IS C G CA V S++F+F++SL A
Sbjct: 128 ISICSGVCAPCVPSTAFAFSISLFIA 153
>Z83226-4|CAI79261.2| 206|Caenorhabditis elegans Hypothetical
protein F43D2.6 protein.
Length = 206
Score = 26.6 bits (56), Expect = 6.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 356 FTNLLLYWILRLARPVLFVFFCCFSTLGVW 267
+T L++ ++ + VL FFCC G W
Sbjct: 87 YTMLIIGLLVSIVLSVLLSFFCCLLCNGCW 116
>Z66519-6|CAA91374.3| 394|Caenorhabditis elegans Hypothetical
protein B0334.6 protein.
Length = 394
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 335 WILRLARPVLFVFFCCFSTLGVWPLTLPARA 243
W L +A V F F+TL V PL++P+ A
Sbjct: 79 WNLLIALAVCDSLFLIFATLDVTPLSIPSLA 109
>AF000194-3|AAK39379.1| 191|Caenorhabditis elegans Hypothetical
protein ZC328.5 protein.
Length = 191
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 254 PARARDPCTLPPRRGTVRSSSVDES 180
P RA+ P T PP TV SS+ +S
Sbjct: 24 PCRAKRPTTEPPSTTTVESSTTRDS 48
>AC006748-6|AAF60516.1| 582|Caenorhabditis elegans Hypothetical
protein Y39A3B.5a protein.
Length = 582
Score = 26.2 bits (55), Expect = 9.0
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -3
Query: 332 ILRLARPVLFVFFCCFSTLGVWPLTLPA 249
++++ V+ +FFCC++ +W L L A
Sbjct: 407 VIKMLIVVVIIFFCCWTPSYIWWLLLIA 434
>AC006748-5|AAX55685.1| 471|Caenorhabditis elegans Hypothetical
protein Y39A3B.5c protein.
Length = 471
Score = 26.2 bits (55), Expect = 9.0
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -3
Query: 332 ILRLARPVLFVFFCCFSTLGVWPLTLPA 249
++++ V+ +FFCC++ +W L L A
Sbjct: 296 VIKMLIVVVIIFFCCWTPSYIWWLLLIA 323
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 22.6 bits (46), Expect(2) = 9.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 257 LPARARDPCTLPPRR 213
+PARA P PPRR
Sbjct: 174 IPARALSPRKTPPRR 188
Score = 21.8 bits (44), Expect(2) = 9.7
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 224 PPRRGTVRSSSVDESSDTRHESSRGAP 144
PPRRG+ R S + RG+P
Sbjct: 216 PPRRGSPRRGSPRRDTRRSPPRRRGSP 242
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,942,156
Number of Sequences: 27780
Number of extensions: 160321
Number of successful extensions: 526
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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