Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J24
         (163 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   1.8  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        23   7.2  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    23   7.2  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    23   7.2  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    22   9.5  
SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa...    22   9.5  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 57  FIYSSLHLNFFIR 19
           F+++SLH NFF R
Sbjct: 122 FLFTSLHFNFFFR 134


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 75  PWLRTRFIYSSLHLNFFIRNTIP 7
           P+    F   S H NFF R+T P
Sbjct: 136 PFYTLSFDTFSTHTNFFPRHTFP 158


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 23  IKKFKCSEEYIKRVRSHGQTASA 91
           + K +   E  KRV S+G TASA
Sbjct: 284 LAKLRAQCEITKRVLSNGTTASA 306


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 93  IALAVCPWLRTRFIYSSLHLNFFIRNTI 10
           + LA C WLR   I      N+  R+++
Sbjct: 912 LVLAACTWLRPHVIVLDEPTNYLDRDSL 939


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 109 LINFINSTSCLPVAAHSFYIFFTAFKFLYTEHY 11
           +INF N++  + +    FY+   A     TE Y
Sbjct: 165 IINFWNASGPVSIWISVFYVIIIAINIWGTEGY 197


>SPBP19A11.01 |||glycine decarboxylase complex subunit
           H|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 169

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -1

Query: 109 LINFINSTSCLPVAAHSFYIFFTAFKFLYTEHYS 8
           L + + +  CL  AA +  + ++A K+  T+H++
Sbjct: 15  LTSSVKTGFCLKAAAPTLSMKWSAVKYYSTKHFT 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 610,218
Number of Sequences: 5004
Number of extensions: 8126
Number of successful extensions: 24
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)