Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J24
         (163 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016685-6|AAG24147.1|  338|Caenorhabditis elegans Seven tm rece...    26   4.1  
U42836-2|ABC48244.1|  278|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U42836-1|ABC48243.1|  497|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AF003142-1|AAB54189.2|  389|Caenorhabditis elegans Hypothetical ...    25   9.6  

>AF016685-6|AAG24147.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 84 protein.
          Length = 338

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 136 YLMIIIHLQLINFINSTSCLPVAAHSFYIFFTAFK 32
           YLMI+ ++ LI +  +T+   +AAHS    +  F+
Sbjct: 45  YLMIVYNVVLIMYSTATTNANLAAHSTETSYVLFR 79


>U42836-2|ABC48244.1|  278|Caenorhabditis elegans Hypothetical
           protein T21F2.1b protein.
          Length = 278

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 127 IIIHLQLINFINSTSCLPVAAHSFYIFFTAFKFLYTEHY 11
           +++ ++   F+N      ++A  F + FTAF   Y  +Y
Sbjct: 232 LLLQMESPMFVNGEKIDEISAKLFPLLFTAFNIFYWFYY 270


>U42836-1|ABC48243.1|  497|Caenorhabditis elegans Hypothetical
           protein T21F2.1a protein.
          Length = 497

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 127 IIIHLQLINFINSTSCLPVAAHSFYIFFTAFKFLYTEHY 11
           +++ ++   F+N      ++A  F + FTAF   Y  +Y
Sbjct: 451 LLLQMESPMFVNGEKIDEISAKLFPLLFTAFNIFYWFYY 489


>AF003142-1|AAB54189.2|  389|Caenorhabditis elegans Hypothetical
           protein F57C9.6 protein.
          Length = 389

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 127 IIIHLQLINFINSTSCLPVAAHSFYIF--FTAFKFL 26
           +I  + L+N  + +  +PV A S YIF  +T + F+
Sbjct: 304 VIQGMHLVNITSRSKGIPVHARSGYIFTKYTCYLFI 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,340,361
Number of Sequences: 27780
Number of extensions: 43718
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 12,740,198
effective HSP length: 34
effective length of database: 11,795,678
effective search space used: 224117882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)