Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J23
         (236 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    26   0.76 
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    24   2.3  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    23   4.1  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    23   7.1  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    23   7.1  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    22   9.4  

>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 141 PFQSLFSILMFRVLRLSLSSCSKTNIV 221
           PF  LFS    R+L L L +  KT I+
Sbjct: 12  PFSRLFSNKEMRILMLGLDAAGKTTIL 38


>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 144 FQSLFSILMFRVLRLSLSSCSKTNIV 221
           FQSLF     R+L + L +  KT I+
Sbjct: 9   FQSLFGKREMRILMVGLDAAGKTTIL 34


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 75  IHIKIFLSEN*QTAFIINCTT*PFQSLFSILMFRVLRLSLSSCSK 209
           I++ + LS+   + FI+      F SLFS L        LSSC K
Sbjct: 133 IYVLLILSKRLHSIFILRLFNDGFNSLFSSLFI------LSSCKK 171


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 99  QREIFLYVSTKTNFHITADYLVLYSLLTLTPS 4
           Q E   YV+T T   +T  Y     L T+TPS
Sbjct: 411 QVETLTYVTTLTETILTTTYDSHTFLTTITPS 442


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 146 EWLRCTINDKCSLLIF 99
           EW   TI+D+  LL+F
Sbjct: 537 EWAGLTIDDEADLLVF 552


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 128 INDKCSLLIFREKYFYM 78
           IN  C LL+++ KY Y+
Sbjct: 75  INLTCMLLLYKSKYEYI 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 802,520
Number of Sequences: 5004
Number of extensions: 12559
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)